Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0333
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 38 0.006
At3g57780.1 68416.m06436 expressed protein 31 0.89
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 31 0.89
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 30 1.6
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 30 1.6
At3g28770.1 68416.m03591 expressed protein 30 1.6
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 29 2.7
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 3.6
At5g45520.1 68418.m05591 hypothetical protein 29 3.6
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794... 29 4.7
At2g22795.1 68415.m02704 expressed protein 29 4.7
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 4.7
At1g09720.1 68414.m01091 kinase interacting family protein simil... 29 4.7
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 28 6.3
At5g06430.1 68418.m00720 thioredoxin-related contains weak simil... 28 8.3
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 8.3
At1g11790.1 68414.m01353 prephenate dehydratase family protein s... 28 8.3
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Frame = +3
Query: 153 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 332
R+ + NE+ + + E E+ K+ + EK Q+K + +E+N K+ +E +
Sbjct: 744 REKEENERRIKEAREKAELEQRLKATLEQEEK--ERQIKERQEREENERRAKEVLEQAEN 801
Query: 333 KNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQEKSAXXXXXXXXXANVSR 491
+ K +E + +LK T E+N ++ IE E+ A + R
Sbjct: 802 ERKLKEALEQKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIER 855
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3
Query: 162 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 341
+ NE+ E E+ K + +K + +LK T +E+N ++AIE E+++ +
Sbjct: 786 EENERRAKEVLEQAENERKLKEALE--QKENERRLKETREKEENKKKLREAIELEEKEKR 843
Query: 342 FLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQEK 443
+ E + +LK E+ + ++ E+E+
Sbjct: 844 LIEAFERAEIERRLKEDLEQEEMRMRLQEAKERER 878
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 31.1 bits (67), Expect = 0.89
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 216 TQKSLFDGIEKFDSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 392
TQ L D + + + TE +E N L D E EKE++K L+ I + + E
Sbjct: 58 TQSKLSDDDDHAVNDSSEKTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPE 117
Query: 393 TCE 401
TCE
Sbjct: 118 TCE 120
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +3
Query: 267 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
K +E P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 215 LLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 96
++ GN +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 195 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 338
EDV EK D +++ D Q + ++EK +KD E EKEK+
Sbjct: 642 EDVVQEKDGDQEEDVVQEKDGDQEEDGVSKEKEQEKEKDPKEKEKEKD 689
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +3
Query: 165 TNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKF 344
TNE V E+V K + + EK +S K ET++ L + + KE++
Sbjct: 763 TNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGE 822
Query: 345 LNGIENFDPTKLKHTETCEKN 407
N + + + E EKN
Sbjct: 823 DNKEDKEESKDYQSVEAKEKN 843
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Frame = +3
Query: 69 SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 248
S T S D K D + + + + D K +++ KT ++ E+
Sbjct: 716 SQTDSKDD--KSVDDKQEEAQIYGGESKDDKSVEAKGKKKESKENKKTKTNENRVRNKEE 773
Query: 249 FDSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKD 425
K +E EK + KDA E + NK L+ EN D K + E +++ +KD
Sbjct: 774 NVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKD 833
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +3
Query: 63 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA-TEKTQKSLF 233
S SD+PS L+D+ ++ +LK L+G + VDTN +AE A EK +L
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTNLDAEDRAAERKAEVEKAVSTLA 591
Query: 234 D---GIEKFDS 257
EKFDS
Sbjct: 592 QKSKPTEKFDS 602
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 273 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 368
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 216 TQKSLFDGIEKFDSSQLKHTET-QEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 392
T K L D +E+ D + +T +E+ ++ + + ++ +N N + K KH E
Sbjct: 575 TDKKLKDLMEREDDQVQNYGQTSKEEKGNVEETGKQEDGDQGDGINEEANLEDGK-KHDE 633
Query: 393 TCEKNPLPTKDVIEQEK 443
E+ L + +V+E+EK
Sbjct: 634 GKEERSLKSDEVVEEEK 650
>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
Domain of Unknown function
Length = 350
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 222 KSLFDGIEKFDSSQLK---HTETQEKNPLPDKDAIEAEKEKNKFL 347
++LF +F S Q+ H E +EK+ LP +A E KEK K L
Sbjct: 252 EALFSLASRFKSLQMMCKTHFEEEEKDLLPMVEAAEMGKEKQKKL 296
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Frame = +3
Query: 108 TDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQE 287
T+ K ++E + D +T EKI E E+T++ + EK +SS + TE +E
Sbjct: 471 TEAKEKVESSSQEKNEDKET-EKI-----ESSFLEETKEKEDETKEKEESSSQEKTEEKE 524
Query: 288 KNPLPDKDAIEAEKEKNKFLNGIE-----NFDPTKLKHTETCEKNPLPTKDVIEQEKS 446
++++ E+ K+K IE + + +K TET EK +++ +++++
Sbjct: 525 TETKDNEESSSQEETKDKENEKIEKEEASSQEESKENETETKEKEESSSQEETKEKEN 582
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/98 (21%), Positives = 44/98 (44%)
Frame = +3
Query: 153 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 332
++ + EK+ S E ++T EK +SS L+ T+ +E +++ EK
Sbjct: 469 KETEAKEKVESSSQEKNEDKET--------EKIESSFLEETKEKEDETKEKEESSSQEKT 520
Query: 333 KNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 446
+ K +N + + + T+ E + ++ QE+S
Sbjct: 521 EEKETETKDNEESSSQEETKDKENEKIEKEEASSQEES 558
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 63 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 227
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At1g09720.1 68414.m01091 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 928
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = +3
Query: 57 ACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD 236
AC VSD+ D+ K T L+ +L R D N+ + E +T K
Sbjct: 384 ACLVSDS---MDMKKRITVLEDELRKVKNLFQRVEDQNKNLHKHLTEANSTAKDLSGKLQ 440
Query: 237 GI---EKFDSSQLKHTETQEKNPLPDKDAIEAEKE 332
+ E + L + QE++ + D D+I E+E
Sbjct: 441 EVKMDEDVEGDGLNPEDIQEEDTVEDSDSISNERE 475
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = +3
Query: 159 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 338
V + E +LP E +T SL FD E QE+ P + ++E EK +
Sbjct: 112 VVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQAPVEKSLETEKREP 171
Query: 339 KFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
L + + + + + +++ + T+DV E+E
Sbjct: 172 VVLKEDKALEYEE-EASILDKEDHMDTEDVQEEE 204
>At5g06430.1 68418.m00720 thioredoxin-related contains weak
similarity to Swiss-Prot:Q9SEU7 thioredoxin M-type 3,
chloroplast precursor (TRX-M3) [Arabidopsis thaliana]
Length = 194
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = -3
Query: 387 CASA*WD--RSSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGS 214
C WD + + S +C F P R GS S S G N R ++ S S
Sbjct: 19 CLKWPWDSNKQPKSSSSVCDFQGPWLFRSMQTIGSIALSSLTSFGQNPNFRPKKKPLSSS 78
Query: 213 SQWQRLQQTEA 181
Q + Q+ A
Sbjct: 79 EQGEAEQRAFA 89
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
QL+ T+ + K P E +K K D K ++ E C P+P + ++E
Sbjct: 413 QLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGEPVPERFIVEMR 467
Query: 441 KS 446
+S
Sbjct: 468 RS 469
>At1g11790.1 68414.m01353 prephenate dehydratase family protein
similar to gi|2392772 and is a member of the PF|00800
Prephenate dehydratase family. ESTs gb|T21562 and
gb|T21062 come from this gene
Length = 392
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 345 GICSFPSPLR*RLCP-EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFH 169
G+ F + R R C E SS R +A + R +K S S + Q+T++ SFH
Sbjct: 23 GLAEFDADKRRRFCLWECSSSASQRAVTAIEGEIPFSRELKKS-SDELGLTQETQSLSFH 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,744
Number of Sequences: 28952
Number of extensions: 354958
Number of successful extensions: 1205
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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