Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0332
(824 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 445 e-124
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 433 e-120
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 230 e-114
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 387 e-106
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 237 2e-90
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 331 1e-89
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 295 1e-78
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 293 3e-78
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 291 2e-77
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 277 2e-73
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 277 2e-73
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 186 8e-46
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 146 8e-34
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 134 2e-30
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 134 3e-30
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 130 4e-29
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 126 7e-28
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 122 1e-26
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 118 1e-25
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 116 5e-25
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 116 9e-25
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 115 1e-24
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 113 4e-24
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 112 9e-24
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 108 2e-22
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 106 6e-22
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 105 1e-21
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 103 4e-21
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 102 9e-21
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 95 1e-18
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 93 1e-17
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 88 3e-16
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 84 4e-15
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 81 3e-14
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 49 2e-04
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.057
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.40
UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1; ... 36 1.6
UniRef50_A5K5R6 Cluster: RAD protein; n=1; Plasmodium vivax|Rep:... 35 2.2
UniRef50_A7CME0 Cluster: Putative uncharacterized protein precur... 35 2.8
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.8
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 35 2.8
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 34 3.8
UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: V... 34 3.8
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 5.0
UniRef50_Q4RZ84 Cluster: Chromosome undetermined SCAF14954, whol... 33 6.6
UniRef50_A2Y1B1 Cluster: Putative uncharacterized protein; n=4; ... 33 6.6
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 8.7
UniRef50_UPI00006CEBDB Cluster: ankyrin repeat family protein, p... 33 8.7
UniRef50_A7TPB7 Cluster: Putative uncharacterized protein; n=1; ... 33 8.7
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 445 bits (1096), Expect = e-124
Identities = 203/253 (80%), Positives = 226/253 (89%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV
Sbjct: 7 KHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVM 66
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKV
Sbjct: 67 QRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKV 126
Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
K+ G K VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGG
Sbjct: 127 KKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGG 186
Query: 547 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRL 726
RNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG++L
Sbjct: 187 RNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKL 246
Query: 727 TXAEERDKRIXXK 765
+ AEERDKR+ K
Sbjct: 247 SIAEERDKRLAAK 259
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 433 bits (1066), Expect = e-120
Identities = 193/253 (76%), Positives = 224/253 (88%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
KHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM 66
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
QR IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV
Sbjct: 67 QRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126
Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
+++ G K +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNLCM+TGG
Sbjct: 127 RKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGG 186
Query: 547 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRL 726
NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG K +ISLPRGKGIRL
Sbjct: 187 ANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRL 246
Query: 727 TXAEERDKRIXXK 765
T AEERDKR+ K
Sbjct: 247 TIAEERDKRLAAK 259
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 230 bits (562), Expect(2) = e-114
Identities = 97/140 (69%), Positives = 123/140 (87%)
Frame = +1
Query: 346 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 525
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 526 LCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 705
+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG K ++SLP
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSLP 271
Query: 706 RGKGIRLTXAEERDKRIXXK 765
RGKGIRLT AEERDKR+ K
Sbjct: 272 RGKGIRLTIAEERDKRLAAK 291
Score = 204 bits (498), Expect(2) = e-114
Identities = 94/114 (82%), Positives = 102/114 (89%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
KHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM 66
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 348
QR IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 67 QRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 387 bits (952), Expect = e-106
Identities = 177/258 (68%), Positives = 212/258 (82%)
Frame = +1
Query: 1 LXKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 180
L KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I
Sbjct: 5 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISI 64
Query: 181 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 360
+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLC
Sbjct: 65 LMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLC 124
Query: 361 KVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 540
KV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+T
Sbjct: 125 KVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVT 184
Query: 541 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 720
GGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI
Sbjct: 185 GGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGI 244
Query: 721 RLTXAEERDKRIXXKVAA 774
+LT EE KR+ + AA
Sbjct: 245 KLTIIEEARKRLASQQAA 262
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 237 bits (580), Expect(2) = 2e-90
Identities = 101/151 (66%), Positives = 127/151 (84%)
Frame = +1
Query: 298 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 477
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 478 IATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLN 657
+ T KI DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLS 195
Query: 658 NVFIIGKGTKAYISLPRGKGIRLTXAEERDK 750
N+F+IGKG +ISLP GKGIR T AEE+ +
Sbjct: 196 NIFVIGKGNIPWISLPHGKGIRFTIAEEKKR 226
Score = 118 bits (285), Expect(2) = 2e-90
Identities = 54/69 (78%), Positives = 59/69 (85%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRM 66
Query: 187 QRLIKVDGK 213
Q IK+DGK
Sbjct: 67 QHFIKMDGK 75
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 331 bits (814), Expect = 1e-89
Identities = 147/249 (59%), Positives = 191/249 (76%)
Frame = +1
Query: 10 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 189
HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK
Sbjct: 8 HLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKN 67
Query: 190 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 369
R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK++
Sbjct: 68 RTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIE 127
Query: 370 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 549
+ G +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG
Sbjct: 128 KRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGN 187
Query: 550 NLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLT 729
+GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGKGT+ ++LP KGI+
Sbjct: 188 GMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLVNLPLDKGIKKP 247
Query: 730 XAEERDKRI 756
++ ++ I
Sbjct: 248 LLQQVNETI 256
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 295 bits (723), Expect = 1e-78
Identities = 136/250 (54%), Positives = 185/250 (74%), Gaps = 1/250 (0%)
Frame = +1
Query: 1 LXKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 180
+ KH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I
Sbjct: 5 IKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNI 64
Query: 181 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 360
+K+ I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLC
Sbjct: 65 LKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLC 124
Query: 361 KVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 540
KV RV+ G K +PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+LC++
Sbjct: 125 KVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVI 184
Query: 541 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 720
G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGKGTK++ISLPR +G+
Sbjct: 185 KGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKSFISLPRFRGL 244
Query: 721 R-LTXAEERD 747
R LT + E D
Sbjct: 245 RTLTKSLEHD 254
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 293 bits (720), Expect = 3e-78
Identities = 134/243 (55%), Positives = 178/243 (73%)
Frame = +1
Query: 10 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 189
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 190 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 369
RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVN 141
Query: 370 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 549
+ G K +P++VTHDGRTI Y DP ++V+D+++ +I T ++ IKF+ G++ M+T G
Sbjct: 142 QFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGG 201
Query: 550 NLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLT 729
N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+ ISLP +G+R +
Sbjct: 202 NVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLISLPAREGVRPS 261
Query: 730 XAE 738
E
Sbjct: 262 ILE 264
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 291 bits (713), Expect = 2e-77
Identities = 139/233 (59%), Positives = 175/233 (75%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI
Sbjct: 18 QHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICM 76
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
Q IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK+
Sbjct: 77 QWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKM 136
Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
+++ K +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF++GNLC++TGG
Sbjct: 137 RKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGG 195
Query: 547 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 705
N GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG K +ISLP
Sbjct: 196 GNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNKPWISLP 244
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 277 bits (680), Expect = 2e-73
Identities = 140/280 (50%), Positives = 183/280 (65%), Gaps = 31/280 (11%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPHK 99
KHLKR+NAPK+WML+ KL +Y A RPS GPHK
Sbjct: 88 KHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPHK 147
Query: 100 LRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 273
LRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV IEKT
Sbjct: 148 LRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKT 207
Query: 274 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 453
++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P IK
Sbjct: 208 DQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIK 267
Query: 454 VNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTG 633
+ D+++ D+ KI +F ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G
Sbjct: 268 IGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKG 327
Query: 634 HTFATRLNNVFIIGKGTKAYISLPRGKGIRLTXAEERDKR 753
+ FATRL N+F++G+G K++I LP G G+R T EER ++
Sbjct: 328 NAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEERKRK 367
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 277 bits (679), Expect = 2e-73
Identities = 130/251 (51%), Positives = 170/251 (67%), Gaps = 1/251 (0%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
KHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++
Sbjct: 4 KHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILR 63
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
Q L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV
Sbjct: 64 QGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKV 123
Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
+ T VP VTHDG IRYPDP + D+I ++ K +D IK G ++TGG
Sbjct: 124 VNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGG 183
Query: 547 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG-TKAYISLPRGKGIR 723
N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK +++P+ +G+R
Sbjct: 184 ANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGKDLNNLQVTVPKQQGLR 243
Query: 724 LTXAEERDKRI 756
+ +ER++R+
Sbjct: 244 MNVIQEREERL 254
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 186 bits (452), Expect = 8e-46
Identities = 94/245 (38%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
Frame = +1
Query: 10 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 189
HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ +
Sbjct: 8 HLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAE 67
Query: 190 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 369
+ IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV
Sbjct: 68 KNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVT 127
Query: 370 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 549
+ + +PY+V+ G +IR+ DP I + +I++ T+K++++I + ++ G+
Sbjct: 128 KKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGK 186
Query: 550 NLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK-AYISLPRGKGIRL 726
GRVG +++ G + + D G+TF+ + +IG+ ++ +I+LP+ +GIR
Sbjct: 187 ARGRVG-VINTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIRQ 245
Query: 727 TXAEE 741
+ E+
Sbjct: 246 SELEK 250
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 146 bits (353), Expect = 8e-34
Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 10/245 (4%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
+ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++
Sbjct: 8 RRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLIS 67
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCK 363
+ +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +
Sbjct: 68 EGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVR 126
Query: 364 VKRVATGPKNVPYLVTHDGRTI--RYPDP------LIKVNDSIQLDIATTKIMDFIKFES 519
++ T L HDGR I R DP + + D++ + + +I IKF
Sbjct: 127 IENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGE 186
Query: 520 GNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 696
G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG + I
Sbjct: 187 GAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVI 245
Query: 697 SLPRG 711
SLP G
Sbjct: 246 SLPEG 250
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 134 bits (325), Expect = 2e-30
Identities = 82/234 (35%), Positives = 123/234 (52%), Gaps = 10/234 (4%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 8 KHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQ 67
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+
Sbjct: 68 TGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKI 125
Query: 367 --KRVATGPKNVPYLVTHDGR--------TIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 516
K V G N+ L HDGR + + + K DS+ + I I + F
Sbjct: 126 VNKTVVKG-GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFG 183
Query: 517 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 678
G L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 184 EGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 134 bits (323), Expect = 3e-30
Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 16/240 (6%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 183
+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+
Sbjct: 10 RHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKII 69
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 363
+ I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C+
Sbjct: 70 TRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCR 129
Query: 364 VKRVATGPKNVPYLVTHDGRT--IRYPDP------LIKVNDSIQLDI------ATTKIMD 501
+K + HDG+ + DP + V DS+ L++ + K++D
Sbjct: 130 IKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVD 189
Query: 502 FIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGK 678
I FE G GR+ G VG +V + G D++ +++ G F T + IGK
Sbjct: 190 HIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAIGK 249
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 130 bits (314), Expect = 4e-29
Identities = 76/236 (32%), Positives = 122/236 (51%), Gaps = 4/236 (1%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
KHLK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 8 KHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIIN 67
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
+ VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+
Sbjct: 68 SGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKI 125
Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
+T + HDG+ + + V D I L + +I + + + G +ITGG
Sbjct: 126 VNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGG 185
Query: 547 RNLGRVGT----IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISL 702
++ G +GT IV+ +P + + I++S F T + F++G+ A ISL
Sbjct: 186 KHTGELGTVSEIIVNESSNPNT---IIIENSAKDEFLTLKDYAFVVGEDAPA-ISL 237
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 126 bits (304), Expect = 7e-28
Identities = 76/233 (32%), Positives = 119/233 (51%), Gaps = 9/233 (3%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
+HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+
Sbjct: 10 RHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILA 69
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
R+I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YKL ++
Sbjct: 70 SRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQI 129
Query: 367 KRVATGPKNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIATTKIMDFIKFESG 522
+R T HDGR + Y + K D++ + I I+ + FE G
Sbjct: 130 RRKMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVG 189
Query: 523 NLCMITGGRNLGRVGTI-VSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 678
L ++ GRN+G +G I ++ S +V ++D++G T L V +GK
Sbjct: 190 TLAIVVDGRNVGFMGRINAIQQVFKRSRALVELEDASGAKSRTILQYVLPVGK 242
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 122 bits (293), Expect = 1e-26
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 3/226 (1%)
Frame = +1
Query: 10 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 189
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 190 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 369
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 370 RVATGPKNVPYLVTHDGRTI---RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 540
L HDGR I + + S+ +++ K+MD+ + +
Sbjct: 123 DKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAF 182
Query: 541 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 678
G N+GR GT+++ R D + + F T LN + +IGK
Sbjct: 183 NGVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLVIGK 228
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 118 bits (285), Expect = 1e-25
Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 1/231 (0%)
Frame = +1
Query: 16 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 195
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 196 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 375
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 376 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 555
P N L THDGRT D KV D + + KI + IK + GN IT G ++
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHV 183
Query: 556 GRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 705
+ GTI E G S ++VH ++ F+T ++VF+IG +++ P
Sbjct: 184 NQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSP 230
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 116 bits (280), Expect = 5e-25
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Frame = +1
Query: 10 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
+ +KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 367 KRVATGPKNVPYLVTHDGR---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 537
+ L HDGR T IK DS+ D+ I I + G ++
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVV 182
Query: 538 TGGRNLGRVGTI 573
G N+G GT+
Sbjct: 183 IHGSNVGFSGTL 194
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 116 bits (278), Expect = 9e-25
Identities = 76/237 (32%), Positives = 115/237 (48%), Gaps = 7/237 (2%)
Frame = +1
Query: 1 LXKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 180
+ K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI
Sbjct: 1 MSKYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKI 59
Query: 181 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 360
+ QR + V+G+ D G D+VSI K + +R+ DVKG I E AK +LC
Sbjct: 60 LHQRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLC 119
Query: 361 KVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATT-----KIMDFIKFESGN 525
K++ T L G + D K DS+ + + T +I+D + GN
Sbjct: 120 KIRNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGN 178
Query: 526 LCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGKGTKA 690
+ MI GG++ G+VG IV R S ++ DS G F T VF++G+ A
Sbjct: 179 VAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGRSAIA 235
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 115 bits (277), Expect = 1e-24
Identities = 60/234 (25%), Positives = 115/234 (49%)
Frame = +1
Query: 1 LXKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 180
+ KH KR+++ K G++ + S+GPH + + L+ ++ A E K+
Sbjct: 5 IKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKV 64
Query: 181 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 360
VK + V+GK +P MD +S N+ +R++ G+ T++ I E K+C
Sbjct: 65 VKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKIC 124
Query: 361 KVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 540
KV ++ ++T D R ++ IKV DS+ + +I+ +KFE G+LC+IT
Sbjct: 125 KVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLIT 184
Query: 541 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISL 702
G++LG + I + ++H++ G + +++ +IG+ + +SL
Sbjct: 185 RGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSILSL 238
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 113 bits (273), Expect = 4e-24
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 1/224 (0%)
Frame = +1
Query: 10 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 189
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 190 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 369
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 370 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 549
T L +DG I + DS+ L I ++ +KFE GNL M+ GG+
Sbjct: 122 NKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQ 180
Query: 550 NLGRVGTIVS-RERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 678
+ G G I+ RE + V I T F T + V +IG+
Sbjct: 181 HSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE 222
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 112 bits (270), Expect = 9e-24
Identities = 69/227 (30%), Positives = 109/227 (48%)
Frame = +1
Query: 10 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 189
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 190 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 369
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 370 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 549
L HDG T+ + K DS+ L + KI + G+L M+T G+
Sbjct: 123 NKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGK 181
Query: 550 NLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKA 690
+ G +G + + S + + F T VF+IGK + A
Sbjct: 182 HSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDSPA 228
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 108 bits (259), Expect = 2e-22
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 8/231 (3%)
Frame = +1
Query: 10 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 189
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 190 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 369
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 370 RVATGPKNVPYLVTHDGRTIRYP-DPLIKVN----DSIQLDIATTKIMDFIKFESGNLCM 534
T V L DGR I + L + N ++++++ KI + G M
Sbjct: 123 NKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAM 182
Query: 535 ITGGRNLGRVGTI--VSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGK 678
I GGRN G G I + ++ + +V ++ G TF T L NV IG+
Sbjct: 183 IIGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGE 233
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 106 bits (255), Expect = 6e-22
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 2/224 (0%)
Frame = +1
Query: 10 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 189
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 190 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 369
R + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 370 RVATGPKNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
+T + HDGR I D L D++ + + + F G +TGG
Sbjct: 123 GKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGG 182
Query: 547 RNLGRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIG 675
++G +VSR+ + + V D F T + VFIIG
Sbjct: 183 SHIGITAKVVSRDIKRSSKPNEVQFPD-----FGTVADYVFIIG 221
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 105 bits (253), Expect = 1e-21
Identities = 57/188 (30%), Positives = 95/188 (50%)
Frame = +1
Query: 10 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 189
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 190 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 369
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Query: 370 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 549
+ + + +DG I DSI L + K++ IK+E GNL MI GG
Sbjct: 123 GKTSIKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGS 181
Query: 550 NLGRVGTI 573
+ G VG+I
Sbjct: 182 HAGEVGSI 189
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 103 bits (248), Expect = 4e-21
Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 2/222 (0%)
Frame = +1
Query: 16 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 195
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 196 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKR 372
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK+
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 373 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 552
G + L HDG+TI I +D + + I +I + +K G+ ITGG +
Sbjct: 127 TIIGTGKI-QLGFHDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSH 185
Query: 553 LGRVGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFIIG 675
+G + TI S E S ++V++ + F+T + +F++G
Sbjct: 186 VGELATIKSIEVKKSSVKNMVYLNEG----FSTIKDYMFVVG 223
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 102 bits (245), Expect = 9e-21
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LXKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 177
+ +HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV
Sbjct: 5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRY 64
Query: 178 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 357
++ + VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K
Sbjct: 65 LLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKY 124
Query: 358 CK-VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 534
K +++V+ + Y +T DGRT D K + + +I KI + I E
Sbjct: 125 GKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAY 182
Query: 535 ITGGRNLGRVGTI 573
I G++ GR+G I
Sbjct: 183 IIRGKHTGRIGVI 195
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 95.5 bits (227), Expect = 1e-18
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 1/231 (0%)
Frame = +1
Query: 16 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 195
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 196 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 375
+ VDGKV + GFMD +++ + L + YD KG+ I E KL +VK
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 376 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 555
+ HDG T+ IK DS+ + I +I+D +KF GN ITGG ++
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHV 183
Query: 556 GRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 705
G + TI S E + ++VH+ + F+T + VF++G K S+P
Sbjct: 184 GEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG-SPKYTFSMP 229
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 92.7 bits (220), Expect = 1e-17
Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 4/224 (1%)
Frame = +1
Query: 16 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 195
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 196 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 375
+ ++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 376 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA---TTKIMDFIKFESGNLCMITGG 546
T + G + K DS+ + IA + + GN+ +I GG
Sbjct: 124 TTIKGGKTQINLTSGANF-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGG 182
Query: 547 RNLGRVGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFIIG 675
++ + G +V S + V I+D+ G+ F T + V++IG
Sbjct: 183 QHTMKTGKLVEILVQESSLPNRVIIEDADGNKFETIEDYVYMIG 226
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 87.8 bits (208), Expect = 3e-16
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 2/226 (0%)
Frame = +1
Query: 1 LXKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 180
+ H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E
Sbjct: 1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYA 59
Query: 181 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 360
+ + + ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL
Sbjct: 60 LNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLG 119
Query: 361 KVKRVATGPKNVPYLVTHDGRT-IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 537
K+ L HDG T I D DSI + +++ ++E G L
Sbjct: 120 KIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTA 179
Query: 538 TGGRNLGRVGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFII 672
G + G VG + + PGS + V + G F T V +I
Sbjct: 180 VDGAHAGEVGEVEEIQVTPGSAQNNVIVSQDEGEGFETVEEYVVVI 225
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 84.2 bits (199), Expect = 4e-15
Identities = 53/189 (28%), Positives = 83/189 (43%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
+ + HDGR++ D + V DS + + KI+ + E G ++T G
Sbjct: 128 TSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKILKVARMEKGAHAVVTRG 186
Query: 547 RNLGRVGTI 573
N G GTI
Sbjct: 187 TNAGSTGTI 195
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 81.4 bits (192), Expect = 3e-14
Identities = 54/167 (32%), Positives = 86/167 (51%)
Frame = -3
Query: 750 LVPLLGXGKANALPARQRNVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 571
L+ + G+ + L +R+ RL A D EHV + R + ++ GVL VHN EG + LA D
Sbjct: 27 LLLFVDDGELDTLALGKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALD 86
Query: 570 GAHTPQVTASRDHTQVPRLKLDEVHNLRSCDV*LDGIVDFDKWVWVADGAAIMRYQVRNI 391
V + DH Q ++LD + +L DV +G+ D + V +GAA+++ R+
Sbjct: 87 HPDATGVVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHA 146
Query: 390 LRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLLN*DNI 250
L QLVL D V ES+L ++D + FI+L + D++
Sbjct: 147 LVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 48.8 bits (111), Expect = 2e-04
Identities = 28/89 (31%), Positives = 47/89 (52%)
Frame = -3
Query: 765 LGXDALVPLLGXGKANALPARQRNVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMS 586
LG L+ L + + L R+R RL LA+ EH+ Q + + G+L+V ++G +
Sbjct: 88 LGCKPLLGLFDDRQLDXLTLRKRYPRLCPLANDEHIAQTSCKFMPSGILNVDGLKGPLVL 147
Query: 585 LAGHDGAHTPQVTASRDHTQVPRLKLDEV 499
L D ++T V ++ H +P +K DEV
Sbjct: 148 LPVLDDSNTAPVPSTSHHDNIPNIKFDEV 176
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.057
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +1
Query: 82 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 261
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 262 IEKTNELFRLIYDVKG 309
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.40
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -3
Query: 282 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 103
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 102 QLV 94
Q +
Sbjct: 110 QFI 112
>UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1;
Kineococcus radiotolerans SRS30216|Rep: Putative
uncharacterized protein - Kineococcus radiotolerans
SRS30216
Length = 189
Score = 35.5 bits (78), Expect = 1.6
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Frame = -2
Query: 766 PWXXCACPA--PRXW*GECPSRAAAKCTPSCPCRL*TRCSTSW-RRCVPWSP*CAQCRRS 596
P CPA P CP+R A+C CP R RC RC P RR
Sbjct: 5 PCCFARCPARCPARCPARCPARCPARCPARCPARCPARCPARCPARCPAHCPNNGAARRW 64
Query: 595 RDVSRGTRWCP 563
R + R P
Sbjct: 65 RPAAAARRARP 75
>UniRef50_A5K5R6 Cluster: RAD protein; n=1; Plasmodium vivax|Rep:
RAD protein - Plasmodium vivax
Length = 413
Score = 35.1 bits (77), Expect = 2.2
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = +3
Query: 516 VWELVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQ--GHEG 689
+W + YD G G+ G + H H+ H +H+ H + H R GHE
Sbjct: 290 MWIVKYDQGGRGGGSGGGGHDKHKHKHKHGHHRHENHHHSHVHHSHDHHSHGRDNHGHEN 349
Query: 690 VHFAAAREGHSPYHXRGAGQAH 755
H + HS H + H
Sbjct: 350 HHHSHDHHSHSHDHHTHSHDNH 371
>UniRef50_A7CME0 Cluster: Putative uncharacterized protein
precursor; n=1; Ralstonia pickettii 12D|Rep: Putative
uncharacterized protein precursor - Ralstonia pickettii
12D
Length = 533
Score = 34.7 bits (76), Expect = 2.8
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 540 GRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQ-RVHNRQGHEGVHFAAARE 713
G+P + A HRV +E + R H+ + H+ EQ RVH R G EG A E
Sbjct: 317 GKPAVQALEAHRVDQERADRRRDAPHRNVQRFHVDARAEQERVHQRDGAEGHEDVFAEE 375
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 34.7 bits (76), Expect = 2.8
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +3
Query: 447 YQSQRFHPVRHRNYEDYGLHQV*VWELVY--DHGRP*LGACGHHRVPRETSRLLRHCAHQ 620
+ + + HP+R Y G+ V +LV DH R A HR R RL + H+
Sbjct: 31 FHAFKIHPLRIA-YRT-GIDVTLVQQLVSGEDHQRLFKAALARHRKSRRDQRLHKSLRHK 88
Query: 621 GLHGTHLRHEVEQRVHNRQGHE 686
G+ L+H++EQ +G +
Sbjct: 89 GIAQAELQHKIEQDYQETKGQK 110
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 34.7 bits (76), Expect = 2.8
Identities = 32/103 (31%), Positives = 44/103 (42%)
Frame = -1
Query: 548 RPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 369
RPP H SN + S + A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 368 LTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 240
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 34.3 bits (75), Expect = 3.8
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -2
Query: 682 CPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRWCPHAPSYGL 542
C CR R RRC PWSP CAQ C + RDV +G C P Y L
Sbjct: 144 CRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDV-QGAARCECRPGYRL 193
>UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: VrrB
- Bacillus anthracis
Length = 115
Score = 34.3 bits (75), Expect = 3.8
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +3
Query: 606 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHFAAAREGHSPYHXRGAGQAH 755
H HQG HG H H H+ QGH G H +GH +H Q H
Sbjct: 17 HQGHQGHHG-HQGH------HHHQGHHGHHGHHHHQGHHGHHGHHQQQVH 59
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 5.0
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 40 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 219
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 220 TDPT-YPAGFMDVVSIEKTNELFRLIYDVKG 309
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_Q4RZ84 Cluster: Chromosome undetermined SCAF14954, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14954,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 280
Score = 33.5 bits (73), Expect = 6.6
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Frame = -2
Query: 715 PSRAAAKCTPSCP----CRL*TRC------STSWR-RCVPWSP*CAQCRRSRDVSRG 578
PSRA+A+ +P CP C TRC STSWR C P SP A R+ SRG
Sbjct: 99 PSRASARTSPRCPTRSGCPRWTRCAWPSATSTSWRSSCSPTSPSGAAAARATR-SRG 154
>UniRef50_A2Y1B1 Cluster: Putative uncharacterized protein; n=4;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 758
Score = 33.5 bits (73), Expect = 6.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 615 HQGLHGTHLRHEVE---QRVHNRQGHEGVHFAAAREGHSPYHXRGAGQAH 755
H G G H+RH ++ +H E + +++ GH PY R A Q H
Sbjct: 325 HHGHTGHHIRHFLQLGWDYLHLTYKQEAANLGSSQNGHFPYRWRRASQYH 374
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 8.7
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 403 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 537
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_UPI00006CEBDB Cluster: ankyrin repeat family protein,
putative; n=1; Tetrahymena thermophila SB210|Rep:
ankyrin repeat family protein, putative - Tetrahymena
thermophila SB210
Length = 438
Score = 33.1 bits (72), Expect = 8.7
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 639 LRHEVEQRVHNRQGHEGVHFAAAREGHSPYHXR 737
L H+++ + +++G +H+AA +G+SP + R
Sbjct: 172 LNHKIDLEIQDKKGRSAIHYAAITKGNSPAYIR 204
>UniRef50_A7TPB7 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 228
Score = 33.1 bits (72), Expect = 8.7
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +3
Query: 456 QRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGACGHHRV-PRETSRLLRHCAHQGLHG 632
Q HP+ H+++ H + +L++ P HH + P + + L H HQ LH
Sbjct: 64 QHHHPI-HQHHHHTHQHPHHIRQLLHHIHLP-----HHHTLQPPQVTVQLHHHIHQHLHH 117
Query: 633 TH-LRHEVEQRVH-NRQGHEGVHFAAAREGHSPYHXR 737
TH L H + Q + Q H +H P+H R
Sbjct: 118 THQLHHHIHQLLQVIVQHHHPIHQHHHHTHQHPHHIR 154
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 855,109,402
Number of Sequences: 1657284
Number of extensions: 19265413
Number of successful extensions: 63615
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 59546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63430
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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