Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0332
         (824 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   445   e-125
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   445   e-125
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   445   e-125
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   439   e-123
BT023891-1|ABA81825.1|  505|Drosophila melanogaster LP23312p pro...    31   2.5  
AL121806-11|CAB58086.1|  505|Drosophila melanogaster EG:BACR42I1...    31   2.5  
AE014298-163|AAF45595.1|  505|Drosophila melanogaster CG11382-PB...    31   2.5  
BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p pro...    30   4.4  
AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p pro...    30   4.4  
AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA...    30   4.4  
AE014297-606|AAF54024.1|   74|Drosophila melanogaster CG17934-PA...    29   5.8  
AE014298-1457|AAN09261.3| 2309|Drosophila melanogaster CG17255-P...    29   7.7  
AE014298-1456|AAF46591.4| 2309|Drosophila melanogaster CG17255-P...    29   7.7  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  445 bits (1096), Expect = e-125
 Identities = 203/253 (80%), Positives = 226/253 (89%)
 Frame = +1

Query: 7   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
           KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV 
Sbjct: 7   KHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVM 66

Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
           QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKV
Sbjct: 67  QRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKV 126

Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
           K+   G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGG
Sbjct: 127 KKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGG 186

Query: 547 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRL 726
           RNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG++L
Sbjct: 187 RNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKL 246

Query: 727 TXAEERDKRIXXK 765
           + AEERDKR+  K
Sbjct: 247 SIAEERDKRLAAK 259


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  445 bits (1096), Expect = e-125
 Identities = 203/253 (80%), Positives = 226/253 (89%)
 Frame = +1

Query: 7   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
           KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV 
Sbjct: 7   KHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVM 66

Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
           QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKV
Sbjct: 67  QRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKV 126

Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
           K+   G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGG
Sbjct: 127 KKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGG 186

Query: 547 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRL 726
           RNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG++L
Sbjct: 187 RNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKL 246

Query: 727 TXAEERDKRIXXK 765
           + AEERDKR+  K
Sbjct: 247 SIAEERDKRLAAK 259


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  445 bits (1096), Expect = e-125
 Identities = 203/253 (80%), Positives = 226/253 (89%)
 Frame = +1

Query: 7   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
           KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV 
Sbjct: 7   KHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVM 66

Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
           QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKV
Sbjct: 67  QRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKV 126

Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
           K+   G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGG
Sbjct: 127 KKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGG 186

Query: 547 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRL 726
           RNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG++L
Sbjct: 187 RNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKL 246

Query: 727 TXAEERDKRIXXK 765
           + AEERDKR+  K
Sbjct: 247 SIAEERDKRLAAK 259


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  439 bits (1082), Expect = e-123
 Identities = 201/253 (79%), Positives = 224/253 (88%)
 Frame = +1

Query: 7   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
           KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G EV KIV 
Sbjct: 7   KHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAEVTKIVM 66

Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
           QRL+KV GKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKV
Sbjct: 67  QRLVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKV 126

Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
           K+   G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGG
Sbjct: 127 KKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGG 186

Query: 547 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRL 726
           RNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG++L
Sbjct: 187 RNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKL 246

Query: 727 TXAEERDKRIXXK 765
           + AEERDKR+  K
Sbjct: 247 SIAEERDKRLAAK 259


>BT023891-1|ABA81825.1|  505|Drosophila melanogaster LP23312p
           protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 633 THLRHEVEQRVHNRQGHEGVHFAAAREGHS-PYHXRGAG 746
           +H + E     H   GH G H  A+  GH  P+H  G+G
Sbjct: 93  SHFKGESSYGHHFAHGHSGSHGYASSSGHGRPHHYSGSG 131


>AL121806-11|CAB58086.1|  505|Drosophila melanogaster
           EG:BACR42I17.10 protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 633 THLRHEVEQRVHNRQGHEGVHFAAAREGHS-PYHXRGAG 746
           +H + E     H   GH G H  A+  GH  P+H  G+G
Sbjct: 93  SHFKGESSYGHHFAHGHSGSHGYASSSGHGRPHHYSGSG 131


>AE014298-163|AAF45595.1|  505|Drosophila melanogaster CG11382-PB
           protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 633 THLRHEVEQRVHNRQGHEGVHFAAAREGHS-PYHXRGAG 746
           +H + E     H   GH G H  A+  GH  P+H  G+G
Sbjct: 93  SHFKGESSYGHHFAHGHSGSHGYASSSGHGRPHHYSGSG 131


>BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 24  KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 200
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 555 KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


>AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p
           protein.
          Length = 561

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 24  KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 200
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 18  KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 74


>AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 24  KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 200
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 555 KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


>AE014297-606|AAF54024.1|   74|Drosophila melanogaster CG17934-PA
           protein.
          Length = 74

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = -2

Query: 724 GECPSRAAAKCTPSCPCRL*TRCSTSWRRCVPWSP*CAQCR 602
           G C S   + C P  PC     C      C P  P C  CR
Sbjct: 29  GSCCSPCGSCCAPCGPCGPCGPCCGGCGPCGPCGPCCGPCR 69


>AE014298-1457|AAN09261.3| 2309|Drosophila melanogaster CG17255-PB,
           isoform B protein.
          Length = 2309

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 606 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHFAAAREGHSPY 728
           H  HQ  H  H +H  +Q+ H+R  H G         H  Y
Sbjct: 310 HHQHQQHHQQHQQHHHQQQQHHRDYHHGHGRQYGHHSHRDY 350


>AE014298-1456|AAF46591.4| 2309|Drosophila melanogaster CG17255-PA,
           isoform A protein.
          Length = 2309

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 606 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHFAAAREGHSPY 728
           H  HQ  H  H +H  +Q+ H+R  H G         H  Y
Sbjct: 310 HHQHQQHHQQHQQHHHQQQQHHRDYHHGHGRQYGHHSHRDY 350


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,470,034
Number of Sequences: 53049
Number of extensions: 944940
Number of successful extensions: 3185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3180
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3901127880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)