Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0332
(824 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 359 2e-99
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 40 0.002
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.3
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 4.0
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 4.0
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 5.3
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 7.1
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 7.1
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 28 9.3
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 359 bits (882), Expect = 2e-99
Identities = 168/253 (66%), Positives = 199/253 (78%)
Frame = +1
Query: 7 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 186
KHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+
Sbjct: 6 KHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILT 65
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 366
QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCKV
Sbjct: 66 QRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKV 125
Query: 367 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 546
K V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL +TGG
Sbjct: 126 KSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGG 185
Query: 547 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRL 726
RN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G GIRL
Sbjct: 186 RNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRL 245
Query: 727 TXAEERDKRIXXK 765
+ AEERDKR+ K
Sbjct: 246 SIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/63 (36%), Positives = 26/63 (41%)
Frame = +3
Query: 567 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHFAAAREGHSPYHXRGAG 746
HHR E AH G HGTH H E H+ H G H + HSP H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 747 QAH 755
+ H
Sbjct: 460 EHH 462
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/113 (26%), Positives = 37/113 (32%), Gaps = 2/113 (1%)
Frame = +3
Query: 423 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACG-HHRVPRETSR 596
HH + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 597 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHFAAAREGHSPYHXRGAGQAH 755
H H G HG H H H G G H HSP H G+ H
Sbjct: 519 HGEHGTHHGHHGEH--HHAPAH-HGHHGEHGTHHGHHGSHHSPAHHGHHGEHH 568
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +3
Query: 567 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HFAAAREGHSPYH 731
HH E H H G HGTH H GH G H A A GH +H
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 35.1 bits (77), Expect = 0.062
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = +3
Query: 567 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHFAAAREGHSPYHXRGAG 746
HH P H G HG H H GH G H HSP H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 747 QAHXXQG 767
AH G
Sbjct: 690 GAHHEHG 696
Score = 33.5 bits (73), Expect = 0.19
Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Frame = +3
Query: 537 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHFAAA 707
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 708 REGHSP---YHXRGAGQAH 755
H +H G H
Sbjct: 703 HGHHDDKENHHHHGHHSKH 721
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +3
Query: 606 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHFAAAREGHSPYHXRGAGQAH 755
H AH HG H RH E H+ H G H H +H A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 32.7 bits (71), Expect = 0.33
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = +3
Query: 567 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHFAAAREG--HSPYHXRG 740
HH E H H G HG+H H H H H E H +H G
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAG 619
Query: 741 AGQAHXXQG 767
G H G
Sbjct: 620 YGAHHGHHG 628
Score = 32.3 bits (70), Expect = 0.43
Identities = 30/117 (25%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Frame = +3
Query: 423 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELV-YDHGRP*LGACGHH--RVPRET 590
HH + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 591 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVHFAAAREGHSPYHXRGAGQAH 755
+ AH G HG H H H G H G H GH H A H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGHHGTHHSLAHHGH 669
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/115 (22%), Positives = 34/115 (29%), Gaps = 4/115 (3%)
Frame = +3
Query: 423 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 599
HH + + H P H ++ ++G H HG HH P
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHG-------HHGE-------HHHAPAHHGHH 542
Query: 600 LRHCAHQGLHG---THLRHEVEQRVHNRQGHEGVHFAAAREGHSPYHXRGAGQAH 755
H H G HG + H H+ H G H G H G H
Sbjct: 543 GEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGH 597
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Frame = +3
Query: 564 GHHRVPRETSRLLRHCAHQGLH----GTHLRHEVEQRVHNRQGHEGVHFAAAREGHSPYH 731
G H P H H G H H HE H+ H G H H+P H
Sbjct: 411 GTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHH---GEHHHAPAH 467
Query: 732 XRGAGQAH 755
G+ H
Sbjct: 468 HGHHGEHH 475
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 307 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 438
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 525 LVYDHGRP*LGACGHHRVPRETSRLLRH 608
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 525 LVYDHGRP*LGACGHHRVPRETSRLLRH 608
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 423 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 506
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = +3
Query: 606 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHFAAAREGH--SPYHXRGAGQAHXXQG 767
HC G HG H R H G G R GH P+H G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 464 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 300
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 615 HQGLHGTHLRHEVEQRVHNRQGHEGVHFAAAREGHSPYHXRG 740
H G TH H+ + GH G H+ + E H + G
Sbjct: 43 HHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYESHHHHGHHG 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,434,372
Number of Sequences: 27780
Number of extensions: 446492
Number of successful extensions: 1446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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