Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0331
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 31 0.71
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 29 3.8
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 29 3.8
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106... 29 5.0
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 29 5.0
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 29 5.0
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 28 8.7
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 348 PTTPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 199
P PT PP PKT+ + + SSDG R + + S YD R L + R
Sbjct: 24 PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 138 PGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSD 311
PG L + R G+ GL + I +E +S +HK + SL H Y + +L +D
Sbjct: 284 PGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSIAD 341
>10_07_0176 - 13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +1
Query: 451 ICKYFIYLFIYIYACNTFDRS*FLSFIRFLTLSRAF------VATILNLTADIIYLILLR 612
I +F+++FIY +FDR + F+ ++ +S F + I+ L D +YL + R
Sbjct: 987 ITAWFMFIFIYSAIMTSFDRQENVYFVIYVLMSTFFFYLTLLLVPIIALFGDFLYLSIQR 1046
>10_01_0085 +
1061962-1062141,1062283-1062431,1062734-1062819,
1062986-1063113,1063213-1063341,1063428-1063495,
1063575-1063812
Length = 325
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 129 PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSS 308
P G PL+LL GDWG + N+ + K+A T + FV + + N L
Sbjct: 31 PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNFLENGLAGVD 89
Query: 309 D 311
D
Sbjct: 90 D 90
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 137 PGQPAETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLP--IE*FSEV 304
PG+P +TP W + + +P + +P+KR VD T R ++ I+ F EV
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKRGFTQFVDVGNVTATGRRNITGYCIDVFDEV 500
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 204 PRLWGIIANPNPQHEGVSAGCPGL*ARENML 112
P LW +++ P P+++ + G PG R +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 178 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTS 74
PQ P F GLP +G +H D ++A P S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,856,426
Number of Sequences: 37544
Number of extensions: 376405
Number of successful extensions: 885
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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