Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0330
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 30 0.40
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 29 0.54
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 27 3.8
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.0
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 26 5.0
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 25 8.7
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 25 8.7
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 25 8.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.7
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 94 VSLDRH--RRDVASSAKPAIPVTTPAVLVTKMDKIIKNDTGIANVTDAPRADGNV 252
+ +D H + +++SS P + A+ K D + ND + V+D+ D NV
Sbjct: 145 IDVDGHSLQNEISSSTDKLSPSQSDALFEQKQDSLFWNDNAVIVVSDSESDDNNV 199
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 29.5 bits (63), Expect = 0.54
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 394 DKIKAEHNITDLTIDNHEFYNSSFIGNAMFFNEYWANITTKGANAHRLLS 543
D+++ N D I++ +F SSF GN M E A IT A H LS
Sbjct: 504 DRMQKLTNYDDHKINDFKFAVSSFRGNVMPAREAVARITKLVAKPHEQLS 553
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 292 GILKVTPTENTHKVSEPIDPDPDYDMRDISNFTPDKIKAEHNITDL 429
G+ TPT N+H P+ P +++ TP ++ + L
Sbjct: 301 GLASTTPTSNSHSTENPLAIIPSSTSKNLLPETPSIVRFNPRFSQL 346
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/109 (22%), Positives = 41/109 (37%)
Frame = +3
Query: 267 STSGRERLRHPQGHSDREHAQSQRTYRP*P*LRYARHFQLYPG*NKSGTQHNRFNN*QSR 446
+TS R ++ S++ H P Y ++ G N + + +NR + R
Sbjct: 285 NTSSRSNRQNHGNFSEKRHYDRYGNSHP----SYNKYSHYQHGFNYNNSGNNRNESGHPR 340
Query: 447 VLQQFLHRQRYVFQRVLGKYHHEGS*CSSLAQQFPQKGNHDSTVVHIPV 593
R+ Y Q Y G + + PQ N+ ST + IPV
Sbjct: 341 FRNS---RRNYNNQGAYPTYMSNGRSANQSPRNNPQNVNNGSTPIQIPV 386
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +1
Query: 103 DRHRRDVASSAKPAIPVTTPAVLVT-----KMDKII-KNDTGIANVTDAPRADGNV 252
D++ + V+ +AKPA PV+ V +T K D + NDT I ++ G +
Sbjct: 445 DKYGKQVSENAKPAFPVSFLLVTLTDGFPEKPDPLFSNNDTSIITTLESTDETGRL 500
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 303 LEDAGAVHAQKWNLSHGYVAVRPR 232
L+D GA+ Q+++ HG+ A PR
Sbjct: 171 LKDFGAIFGQEFSDRHGFAAQGPR 194
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +1
Query: 190 IIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPDYDM 369
++K D G ++ + GN T P+L N + LK+ + + K + + +P YD
Sbjct: 111 LLKEDAGEKSILEIGCGAGN---TIWPILKENKNSNLKIFAVDYSEKAIDVVKQNPLYDA 167
Query: 370 R 372
+
Sbjct: 168 K 168
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 552 VGIAEQAMSISSLRGDICPVLVE 484
+ + + SISS+RGD+ P LV+
Sbjct: 260 IDLIREKESISSIRGDLIPYLVK 282
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 8.7
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Frame = +2
Query: 284 TAPASSRSLRPRTRTKS--ANLSTL-TLITICETFPTLPRIK*KRNTT*PI*QLTITSST 454
T+ +S+ P T T S N S L T T C T ++P P T TSST
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 313
Query: 455 TVPSSATLCFSTSTGQIS-PRRELMLIACSAIPTEG 559
+ P ST T P ++IP G
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTG 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,052
Number of Sequences: 5004
Number of extensions: 57310
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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