Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0330
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0908 - 24214221-24215933 32 0.56
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 30 2.3
11_01_0636 - 5095754-5095974,5097188-5097254,5097467-5098363 29 3.0
11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960 29 3.0
03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480... 28 6.9
05_04_0070 + 17643945-17644002,17644173-17644775,17645376-176455... 28 9.1
05_02_0107 - 6667944-6668214,6668376-6668524,6668654-6668851,666... 28 9.1
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 9.1
03_05_0134 + 21136413-21136704,21136936-21137465 28 9.1
03_02_0643 - 10090720-10091007,10091121-10091228,10091314-100914... 28 9.1
01_01_0786 - 6094135-6094310,6094458-6094584,6094698-6094788,609... 28 9.1
>12_02_0908 - 24214221-24215933
Length = 570
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 308 VTLRMPEPFTPRSGI*VTDTLPSARGASVTLAIPVSFLMILSIFVTR 168
V L P+P T +G+ V T + AS+ + + V FLM+ + +TR
Sbjct: 33 VFLPFPDPSTMMAGLEVATTAVTGGDASLVVVVGVLFLMVAVVVMTR 79
>08_02_0864 +
21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +1
Query: 112 RRDVASSAKPAIPVTTPAVLVTKMDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGS 291
RRDVA + P + + AV + DK A + NVS T P + V G
Sbjct: 135 RRDVAQPSSPVLSPSASAVSIGS-DKSSSTARSSAGTNGQMSSYTNVSYTDFPSMAVEGQ 193
Query: 292 G 294
G
Sbjct: 194 G 194
>11_01_0636 - 5095754-5095974,5097188-5097254,5097467-5098363
Length = 394
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 123 CIFGEARDSGHDPCSSCY 176
CI+ ++ D GH+ C SCY
Sbjct: 255 CIWSDSGDCGHENCESCY 272
>11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960
Length = 376
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 123 CIFGEARDSGHDPCSSCY 176
CI+ ++ D GH+ C SCY
Sbjct: 250 CIWSDSGDCGHENCESCY 267
>03_05_0502 +
24947444-24947665,24947768-24947823,24947929-24948099,
24948508-24948631,24949086-24949142,24949216-24949312,
24949619-24949826,24950637-24950697,24950793-24950846
Length = 349
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 439 NHEFYNSSFIGNAMFFNEYWANITTKGANAHRLLSNSH 552
+ F N + N M FNE ++ KG H L N H
Sbjct: 217 HRSFKNIKVVSNRMVFNEEGRLVSFKGKTIHVLNKNEH 254
>05_04_0070 +
17643945-17644002,17644173-17644775,17645376-17645579,
17646480-17647009
Length = 464
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 228 CSSGGRQRIRDSDSTSGRERLRHPQGHSDREHAQSQR 338
CS + I + T R R++ +GH+D+E Q+++
Sbjct: 396 CSIPSQIEIHPPNDTRSRGRIKRIKGHNDKEKKQNKK 432
>05_02_0107 -
6667944-6668214,6668376-6668524,6668654-6668851,
6668989-6669250,6669378-6670327,6670907-6671022,
6671121-6671280
Length = 701
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 505 ITTKGANAHRLLSNSHRRATMIQLSFTFPFYGYPIKDITVATGRVHS 645
+T+K AN RLL S A + L+FT P+ D+ + H+
Sbjct: 307 MTSKRANPERLLEVSKDLADRLLLAFTSSPTAIPLSDVVLRDRTAHA 353
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 76 SATTAAVSLDRHRRDVASSAKPAIPVTTPAVLVTKMDKIIKNDTGIANVTDAP 234
S +TAAVS+ ++S +P +P TT AVL + + I VT AP
Sbjct: 314 STSTAAVSVSAET--ISSPVRPIVPTTTAAVLPASVTARSAPE-NIPAVTSAP 363
>03_05_0134 + 21136413-21136704,21136936-21137465
Length = 273
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 228 CSSGGRQRIRDSDSTSGRERLRHPQGHSDREHAQSQR 338
CS + I + T R R++ +GH+D+E Q+++
Sbjct: 205 CSIPSQIEIHPPNDTRSRGRIKRIKGHNDKEKKQNKK 241
>03_02_0643 -
10090720-10091007,10091121-10091228,10091314-10091400,
10091488-10091568,10091669-10091803,10091919-10092140,
10092377-10092457,10092565-10092726,10092851-10093041,
10093190-10093331,10093449-10093547,10093668-10093806,
10094355-10094392
Length = 590
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 553 RRATMIQLSFTFPFYGYPIKDITVATGRVHSHRRARSQLVGRYAIHCSVD 702
R A + LS P Y + VA G +++H++ R Q ++ D
Sbjct: 36 RLAIVSPLSGDQPLYNADRTIVVVANGEIYNHKKIRKQFASKHTFSTGSD 85
>01_01_0786 -
6094135-6094310,6094458-6094584,6094698-6094788,
6094875-6095455
Length = 324
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 16 NRGSQAAWREEFFTPSWFSKSATTAAVSLDRHRRDVASSAKPAIPVT 156
N G+Q +++ PSW + +A HRR V+ S PV+
Sbjct: 58 NGGAQQQQQQQQHQPSWVDEFLDFSATKRGAHRRSVSDSVAFLDPVS 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,322,390
Number of Sequences: 37544
Number of extensions: 409472
Number of successful extensions: 1197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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