Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0330
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15) 36 0.035
SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 36 0.035
SB_22626| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31) 36 0.035
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 36 0.035
SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30) 36 0.035
SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 36 0.035
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 36 0.035
SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 36 0.035
SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32) 36 0.035
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.046
SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9) 29 5.3
SB_45906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68) 28 7.0
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 28 7.0
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 28 9.3
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR D N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 1741 IDHLLKQEAD-TDVNEKPRGDSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVATTPD 1799
>SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 136 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 194
>SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15)
Length = 385
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 303 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 361
>SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 13 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 71
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 503 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 561
>SB_22626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 13 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 71
>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 595 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 653
>SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)
Length = 351
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 263 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 321
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 1052 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 1110
>SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 3 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 61
>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 682
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 594 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 652
>SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 246
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 158 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 216
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 1209 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 1267
>SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 195
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 107 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 165
>SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)
Length = 316
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 13 IDHLLKREAD-TDVNEKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 71
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 35.5 bits (78), Expect = 0.046
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 181 MDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 360
+D ++K + +V + P D N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 1012 IDHLLKREAD-TDVNEKPSGDSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 1070
>SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 31.5 bits (68), Expect = 0.76
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Frame = +1
Query: 145 IPVTTPAVLVTKMDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENT 324
I + + ++V + KII N I N P A+G P G + TP +
Sbjct: 261 IIIISKIIMVMMISKIIINHQIIIN----PSAEGQTVQDTTPDPSAEGQTVQDTTPDPSA 316
Query: 325 H-KVSEPIDPDPDYDMRDISNFTPDKIKAEHNITDLTIDNHE 447
+ + PDP + + + + TPD + D T N +
Sbjct: 317 EGQTVQDTTPDPSAEGQTVQDTTPDPSAEGQTVQDTTPFNDD 358
>SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)
Length = 554
Score = 28.7 bits (61), Expect = 5.3
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 6/162 (3%)
Frame = +1
Query: 73 KSATTAAVSLDRHRRDVASSAKPAIPVTT-PAVLVTKMDKIIKNDTGIANVTDAPRADGN 249
K A A DR + S +P V++ PA+ +D I+++ G+A D G
Sbjct: 40 KRAILLASVGDRTYSLIKSLCQPRTQVSSAPAIFQRTIDSILRDIPGVAVYMDDILVTGE 99
Query: 250 VSVTQIPLLGV-----NGSGILKVTPTENTHKVSEPIDPDPDYDMRDISNFTPDKIKAEH 414
V + L + SG L++ ++ T + + + + + I DK++A
Sbjct: 100 TDVEHLERLDLVLTKLEESG-LRLKNSKCTFMADKVVYLEHCFGAQGIHQ-VEDKVQALL 157
Query: 415 NITDLTIDNHEFYNSSFIGNAMFFNEYWANITTKGANAHRLL 540
T ++ E S++G ++N + N++T A HRLL
Sbjct: 158 E-TRAPVNVSEL--KSYLGLLNYYNRFLPNLSTFIAPQHRLL 196
>SB_45906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +1
Query: 403 KAEHNITDLTIDNHEFYNSSFIGNAMFFNEYWANITTKGANAHRLLSNSHRRATMIQLSF 582
K HN L IDNHE + NA A+ + +++R T+ L F
Sbjct: 623 KIIHNFPPLVIDNHEL---PVVTNAKILGVTITEDLKWNAHVSECIKKANKRLTL--LPF 677
Query: 583 TFPFYG 600
FP +G
Sbjct: 678 IFPLFG 683
>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
Length = 1113
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 449 STTVPSSATLCFSTSTGQISPRRELMLIACSAIPTEGQP*FNCRSHS 589
+TT ++ ++C ST QI+P L + S + T G N S S
Sbjct: 350 ATTTVTATSICASTPVTQITPAPSKSLASVSTLSTVGSAKINNHSSS 396
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Frame = +1
Query: 214 ANVTDAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPDYDMRDIS---N 384
A +T + TQI ++ GI+K P +T + S + D D S N
Sbjct: 13 ARITQTRIPQTRIPRTQITRPWISRIGIIKKNPDNSTSENSNSYNSTSDNSTSDNSTSDN 72
Query: 385 FTPDKIKAEHNITDLTIDNHEFYNSSFIGNAMFFNEYWANITTKGANAHRLLSNS 549
D ++++ TD + ++ ++S N+ N N T+ +N S++
Sbjct: 73 SNSDNSNSDNSNTDNSNSDNSSSDNSSSDNSNSDNSNTDNSTSNNSNPENSTSDN 127
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +3
Query: 144 DSGHDPCSSCYKDGQD----HQE*HRNCQCY*CSSGGRQRIRDSD--STSGRERLRHPQG 305
DS HD S CY D + + + CY S ++ RDSD TS R+ +
Sbjct: 134 DSDHDQTSPCYSDHNQTSPCYSDHDQTPPCY--SDYDQKSPRDSDHNQTSPRDSYHDQKS 191
Query: 306 HSDREHAQS 332
D +H Q+
Sbjct: 192 PRDSDHDQT 200
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 258 DSDSTSGRERLRHPQGHSDREHAQSQRTYRP*P*LRYARHF 380
+ S G+E + +SD+ H ++P P LR++ HF
Sbjct: 146 EDSSRPGQENQQQAGHYSDKHHTPLPSDWQPYPGLRFSFHF 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,015,481
Number of Sequences: 59808
Number of extensions: 465274
Number of successful extensions: 1321
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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