Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0330
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical pr...    61   7e-10
Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical...    29   2.7  
AL132862-17|CAB60551.1|  266|Caenorhabditis elegans Hypothetical...    29   4.7  
Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical
           protein C36E8.3 protein.
          Length = 498

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 26/37 (70%), Positives = 29/37 (78%)
 Frame = +2

Query: 632 GGFIHTGEHVHNWLXATQYIAPLMANFDTSLTNDSYV 742
           GGFI+ G+H HNWL ATQYIAPLMANF T L N + V
Sbjct: 175 GGFIYIGDHSHNWLAATQYIAPLMANFHTYLNNSNIV 211



 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
 Frame = +1

Query: 439 NHEFYNS-SFIGNAMFFNEYWANI-------TTKGANAHRLLSNSHRRATMIQLSFTFPF 594
           +H++Y + +F+G+     +YW N+          G  +H LLS S+RRA   +L F FPF
Sbjct: 103 DHQYYQAETFVGDGETLKKYWINVEQFMKKPKAVGNTSHPLLSQSYRRAVGARLQFKFPF 162

Query: 595 YGYPIKDITVATG 633
           YG+ + ++T+ATG
Sbjct: 163 YGHKMSNLTIATG 175


>Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 310 PTENTHKVSEPIDPDPDYDMRDISNFTPDK 399
           P EN  +  E ++ +P+ D RD+S   P+K
Sbjct: 74  PPENEAEAGEQVEQEPEPDSRDLSAIPPNK 103


>AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 310 PTENTHKVSEPIDPDPDYDMRDISNFTPDK 399
           P EN  +  E ++ +P+ D RD+S   P+K
Sbjct: 74  PPENEAEAGEQVEQEPEPDSRDLSAIPPNK 103


>AL132862-17|CAB60551.1|  266|Caenorhabditis elegans Hypothetical
           protein Y73F8A.23 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = +1

Query: 283 NGSGILKVTPTENTHKVSEPIDP----DPDYDMRDISNFTPDKIKAE---HNITDLTIDN 441
           NGSGI      +  +K++E ID     +P     D  +F  D I ++   HNITD T+D 
Sbjct: 193 NGSGITGPYSYDEGYKMTEYIDKKLQAEPISQKFDYFDFWTDGICSQPDGHNITDGTLDE 252

Query: 442 HEFYNSSFIGN 474
              Y  S   N
Sbjct: 253 TTGYKWSQTNN 263


>Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical
           protein F59A2.1b protein.
          Length = 884

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 118 DVASSAKPAIPVTTPAVLVTKMDKIIKNDTGIANVTDAP 234
           ++ ++AKPAIPVT P V  T   K     +G+     +P
Sbjct: 144 NLLNAAKPAIPVTQPLVATTAQAKSTVPASGVIAPKTSP 182


>Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical
           protein F59A2.1a protein.
          Length = 860

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 118 DVASSAKPAIPVTTPAVLVTKMDKIIKNDTGIANVTDAP 234
           ++ ++AKPAIPVT P V  T   K     +G+     +P
Sbjct: 144 NLLNAAKPAIPVTQPLVATTAQAKSTVPASGVIAPKTSP 182


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
           protein H06O01.2 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 136 KPAIPVTTPAVLVTKMDKIIKNDTGIANVTDAPRADGNVS 255
           +PA+P   PA+L   ++++IK   G+   T +     N++
Sbjct: 182 EPAVPAEGPAILTETVERVIKWRHGVPGATGSATTCYNIA 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,665
Number of Sequences: 27780
Number of extensions: 345098
Number of successful extensions: 1135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)