Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0330
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   4.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.3  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 367 MRDISNFTPDKIKAEHNITDLTIDNHEFYNSSFI 468
           ++ I +F P+    +H    L++ N E YN+ +I
Sbjct: 114 LKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYI 147


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 367 MRDISNFTPDKIKAEHNITDLTIDNHEFYNSSFI 468
           ++ I +F P+    +H    L++ N E YN+ +I
Sbjct: 114 LKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYI 147


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +1

Query: 121 VASSAKPAIPVTTPAVLVTKMDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGIL 300
           V +  +P  P    AV V   D  I N  G+  +       G     +IP+  +   G+L
Sbjct: 111 VRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVL 170


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +1

Query: 121 VASSAKPAIPVTTPAVLVTKMDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGIL 300
           V +  +P  P    AV V   D  I N  G+  +       G     +IP+  +   G+L
Sbjct: 111 VRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVL 170


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +1

Query: 121 VASSAKPAIPVTTPAVLVTKMDKIIKNDTGIANVTDAPRADGNVSVTQIPLLGVNGSGIL 300
           V +  +P  P    AV V   D  I N  G+  +       G     +IP+  +   G+L
Sbjct: 111 VRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVL 170


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 279 RERLRHPQGHSDREHAQSQR 338
           RER R  + HSDR  +Q Q+
Sbjct: 73  REREREQREHSDRVTSQQQQ 92


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 352 DPDYDMRDISNFTPDKIKAE 411
           DPD+   DI N    KIK E
Sbjct: 315 DPDHHSTDIQNCDSVKIKFE 334


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 117 ATVTIETHCCGRCTLREPARSEEFFAP 37
           ATV  +T C GR T     +   FF P
Sbjct: 342 ATVQYDTCCQGRATAIYIDKVSRFFFP 368


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 476 LCFSTSTGQISPRR 517
           LC  T  GQI PR+
Sbjct: 272 LCIQTIGGQIKPRK 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,521
Number of Sequences: 438
Number of extensions: 4566
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)