Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0330
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47680.1 68416.m05192 expressed protein contains similarity t...    31   1.1  
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident...    31   1.1  
At2g19170.1 68415.m02237 subtilase family protein contains simil...    29   3.3  
At3g25840.1 68416.m03219 protein kinase family protein contains ...    29   4.4  
At1g17980.2 68414.m02224 nucleotidyltransferase family protein c...    29   4.4  
At1g17980.1 68414.m02225 nucleotidyltransferase family protein c...    29   4.4  
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a...    29   4.4  
At5g67350.1 68418.m08493 expressed protein                             28   5.8  
At5g04670.1 68418.m00475 expressed protein BRL protein, Homo sap...    28   5.8  
At2g44920.1 68415.m05591 thylakoid lumenal 15 kDa protein, chlor...    28   5.8  

>At3g47680.1 68416.m05192 expressed protein contains similarity to
           hypothetical proteins of [Arabidopsis thaliana]
          Length = 302

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 34  AWREEFFTPSWFSKSATTAAVSLDRHRRDVASSAKP 141
           AWR   F   W S  +T A V   R + D AS+++P
Sbjct: 159 AWRVLRFEQKWLSAPSTKATVMSKRRKSDKASTSQP 194


>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
           identical to ania-6a type cyclin [Arabidopsis thaliana]
           GI:13924511
          Length = 416

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 243 RQRIRDSDSTSGRERLRHPQGHSD--REHAQSQRTYR 347
           R +++D      R+RL+   GHSD  R H+   R YR
Sbjct: 370 RDKLKDRSHHRSRDRLKDSGGHSDKSRHHSSRDRDYR 406


>At2g19170.1 68415.m02237 subtilase family protein contains
           similarity to meiotic serine proteinase TMP GI:6468325
           from [Lycopersicon esculentum]
          Length = 815

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 292 GILKVTPTENTHKVSEPIDPDPDYDMRDISNFTPDKIKAEHNITDLTI 435
           G L  TP  + H++    +   +YDM+  SNF    I   H +   T+
Sbjct: 686 GFLCTTPGISAHEIRNYTNTACNYDMKHPSNFNAPSIAVSHLVGTQTV 733


>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 231 SSGGRQRIRDSDSTSGRERLRHPQGHSDREHAQSQRTYR 347
           S G ++R +DSD    RER +  +  SDRE  + +   R
Sbjct: 274 SEGSKRRDKDSDRRREREREKRREIESDRERRKEKERER 312


>At1g17980.2 68414.m02224 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 586

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
 Frame = +1

Query: 58  PSWFSKSATTAAVSLDRHRRDVASSAKPAIPVTTPAVLVTK------MDKIIKNDTGIAN 219
           PS  SK  T  +     HR    SSA  A   TT     +K      +D   +       
Sbjct: 361 PSHTSKG-TWDSNRRSEHRNSSTSSAPAATTTTTEMSSESKAGSNSPVDGKKRKWGDSET 419

Query: 220 VTDAPRADGNVSVTQIPLLGVNGS------GILKVTPTEN--THKVSEPIDPDPDYDMRD 375
           +TD PR   +++V+ +P+    G       G +  +P ++  T+  SEPI  DP  ++  
Sbjct: 420 LTDQPRNSKHIAVS-VPVENCEGGSPNPSVGSICSSPMKDYCTNGKSEPISKDPPENVVA 478

Query: 376 ISNFTPDKIKAEHNITDLTIDNHEFYNSSFIGN 474
            S   P+ +  E   T    +  E   S   GN
Sbjct: 479 FSKDPPESLPIEKIATPQAHETEELEESFDFGN 511


>At1g17980.1 68414.m02225 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 713

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
 Frame = +1

Query: 58  PSWFSKSATTAAVSLDRHRRDVASSAKPAIPVTTPAVLVTK------MDKIIKNDTGIAN 219
           PS  SK  T  +     HR    SSA  A   TT     +K      +D   +       
Sbjct: 488 PSHTSKG-TWDSNRRSEHRNSSTSSAPAATTTTTEMSSESKAGSNSPVDGKKRKWGDSET 546

Query: 220 VTDAPRADGNVSVTQIPLLGVNGS------GILKVTPTEN--THKVSEPIDPDPDYDMRD 375
           +TD PR   +++V+ +P+    G       G +  +P ++  T+  SEPI  DP  ++  
Sbjct: 547 LTDQPRNSKHIAVS-VPVENCEGGSPNPSVGSICSSPMKDYCTNGKSEPISKDPPENVVA 605

Query: 376 ISNFTPDKIKAEHNITDLTIDNHEFYNSSFIGN 474
            S   P+ +  E   T    +  E   S   GN
Sbjct: 606 FSKDPPESLPIEKIATPQAHETEELEESFDFGN 638


>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
           aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
           GI:3172025, GI:3172044; identical to cDNA putative
           aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
          Length = 1337

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 316 ENTHKVSEPIDP-DPDYDMRDISNFTPDKIKAEHNITDLT 432
           E+  ++ + + P +P+ D+    +F  +KIK +HN+ D T
Sbjct: 189 ESREEMLKKLPPYNPEKDLITFPDFLKEKIKCQHNVLDQT 228


>At5g67350.1 68418.m08493 expressed protein 
          Length = 302

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 721 RSVEVSHQRSNVLRSXQPVVNVLAGVNEPSPWPRL 617
           RS  V  +R+ ++RS + + N     ++PSP P++
Sbjct: 117 RSESVEFRRTGIIRSDRKIKNNFIDYSQPSPQPQI 151


>At5g04670.1 68418.m00475 expressed protein BRL protein, Homo
           sapiens, EMBL:AF005067
          Length = 766

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 302 LRMPEPFTPRSGI*VTDTLPSARGASVT 219
           L +PEP TPR+G+ V    PS R + +T
Sbjct: 287 LALPEPCTPRNGV-VVGLHPSVRASKLT 313


>At2g44920.1 68415.m05591 thylakoid lumenal 15 kDa protein,
           chloroplast identical to SP|O22160 Thylakoid lumenal 15
           kDa protein, chloroplast precursor (p15) {Arabidopsis
           thaliana}; contains 8 pentapeptide repeats
          Length = 210

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 415 NITDLTIDNHEFYNSSFIGNAMFFNEYWANITTKGANAHRLLSNSHRRATMIQLSFT 585
           N+T + + N     ++  GN  F     +NIT  G        N+++  +++ LSFT
Sbjct: 157 NVTKVNLTNANLEGATVTGNTSFKG---SNITGAGEKRKENFHNNNKHISLLPLSFT 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,129,710
Number of Sequences: 28952
Number of extensions: 312668
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)