Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0328
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 90 2e-18
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 5e-16
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 81 7e-16
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 72 6e-13
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 68 9e-12
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 63 3e-10
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 56 4e-08
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 51 1e-06
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 39 0.004
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 38 0.009
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 37 0.015
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 36 0.046
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24) 35 0.081
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 34 0.11
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_34490| Best HMM Match : CUB (HMM E-Value=1.3e-07) 31 1.3
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18) 30 2.3
SB_9360| Best HMM Match : CUB (HMM E-Value=2.5e-35) 30 2.3
SB_33052| Best HMM Match : Ribosomal_S3_C (HMM E-Value=4.2) 29 3.0
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0) 29 5.3
SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0) 29 5.3
SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5) 28 7.0
SB_9616| Best HMM Match : PTS_IIB_fruc (HMM E-Value=2.3) 28 7.0
SB_59414| Best HMM Match : Complex1_LYR (HMM E-Value=7.7) 28 9.3
SB_28044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 90.2 bits (214), Expect = 2e-18
Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Frame = +3
Query: 231 PDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGT 410
PD S N W+ AI G GT + GG +K M F DYP SPP +F ++HPN+Y SG
Sbjct: 1149 PDES-NTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYESGD 1207
Query: 411 VCLSLLDEEKD-----------WRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIY 548
VC+S+L D W P ++ ILL + LLNEPN PA +A ++
Sbjct: 1208 VCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 1264
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 81.8 bits (193), Expect = 5e-16
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Frame = +3
Query: 246 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 425
+L WE + G GT +E G +K M+F +YP PP F ++HPNV+ +G VC+S+
Sbjct: 361 DLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPNVHKNGEVCISI 420
Query: 426 LDE-----------EKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEA 536
L E ++ WRP T++ I+L + +L EPN + PA +A
Sbjct: 421 LHEPGEDKYGYEKADERWRPIHTVETIMLSVISMLAEPNDESPANVDA 468
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 81.4 bits (192), Expect = 7e-16
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +3
Query: 276 GKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLL--DEEKDWR 449
G +GTP+ G++KL + + YP PPK +F P++HPN+ SG +CL L + W+
Sbjct: 4 GAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWK 63
Query: 450 PAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEY 569
PA+ I +L I L+ EPN DP AE + N+ ++
Sbjct: 64 PALNISSVLSTILILMAEPNPDDPLMAEISNEFKYNKAQF 103
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 71.7 bits (168), Expect = 6e-13
Identities = 30/110 (27%), Positives = 63/110 (57%)
Frame = +3
Query: 246 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 425
N++ W+ I + P+ G +++ + F +YP PPK F+ ++HPN+ G VCL +
Sbjct: 22 NILYWQGLIVPEM-PPYNKGAFRIEICFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPI 80
Query: 426 LDEEKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 575
+ E +W+PA +Q++ + L+++P + P +A+ Y +++ ++ K
Sbjct: 81 ISPE-NWKPATKTEQVIQALLALVHDPEPEHPLRADLAEEYSKDKKKFMK 129
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 67.7 bits (158), Expect = 9e-12
Identities = 42/114 (36%), Positives = 56/114 (49%)
Frame = +3
Query: 231 PDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGT 410
P G +L W I G G+ +EGG++ L + F DYP PPK G
Sbjct: 119 PKGD-DLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPPK---------------GM 162
Query: 411 VCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYD 572
VCL +L + W PA+TI ++LL I LL + N DP +Y QNR E+D
Sbjct: 163 VCLDILKDS--WSPALTISKVLLSICSLLTDCNPADPLVGSIAALYVQNRSEHD 214
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 62.9 bits (146), Expect = 3e-10
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 342 PSSPPKCKFEPPLFHPNVYPSGTVCLSLL--DEEKDWRPAITIKQILLGIQDLLNEPNVK 515
P PPK +F P++HPN+ SG +CL L + W+PA+ I +L I L+ EPN
Sbjct: 40 PFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNPD 99
Query: 516 DPAQAEAYTIYCQNRLEY 569
DP AE + N+ ++
Sbjct: 100 DPLMAEISNEFKYNKAQF 117
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 55.6 bits (128), Expect = 4e-08
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +3
Query: 246 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 422
N+ +E I G + GG +K + +DYP++PP + ++HPN+ G+VCLS
Sbjct: 35 NMEEFELQITPTDGA-YRGGQFKFS-VKTEDYPNTPPVPRCVNNIYHPNMDLDDGSVCLS 92
Query: 423 LLDEEKDWRPAITIKQILLGIQDLLNEPNVKDP 521
LLD DW + ++ ++ G+ L PN++DP
Sbjct: 93 LLD---DWNESNDLEDLVQGLLFLFYNPNLEDP 122
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +3
Query: 366 FEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTI 545
F +FHPNV +G +C++ L +KDW+P + IKQ+LL ++ LL PN + EA +
Sbjct: 147 FLTKIFHPNVAKNGEICVNTL--KKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKL 204
Query: 546 YCQNRLEYDK 575
+ +Y K
Sbjct: 205 LLERYDDYSK 214
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/92 (30%), Positives = 48/92 (52%)
Frame = +3
Query: 246 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 425
N+ +E I G + GG +K + DYP+ P + ++HPN+ VC+SL
Sbjct: 35 NMEEFELQITPTDGA-YRGGQFKFS-VRTTDYPNVAPSINCKTKIYHPNMDGYDGVCMSL 92
Query: 426 LDEEKDWRPAITIKQILLGIQDLLNEPNVKDP 521
LD DW+ + ++ ++ G+ L PN++DP
Sbjct: 93 LD---DWQASNDLEDLVQGLLFLFYNPNLEDP 121
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Frame = +3
Query: 270 IPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPP-----LFHPNVYPSGTVCLSLLDE 434
I G TP+EGG + + DYP PP+ K F+PN+Y +G VCLS++ +
Sbjct: 17 ITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYRNGKVCLSIIGD 76
Query: 435 --EKDWRPAITIKQILLGIQDLLNEPNVKDP 521
EK + ++ + LN N++DP
Sbjct: 77 VMEKSFPEFYDYYISVITEKSYLNGQNMQDP 107
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 43.6 bits (98), Expect = 2e-04
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = +3
Query: 150 ASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIF 329
A RL E K R + A+P+++ NL W + G T + GG Y R+I
Sbjct: 11 AVKRLMREAKELRNATEL-YHAQPLED-----NLFEWHFTVRGPPDTEFAGGRYHGRIIL 64
Query: 330 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL-LDEEKDWRPAITIKQILLGI 485
+YP PP P + +CLS+ + W+P+ +I+ +L+ I
Sbjct: 65 PPEYPMKPPSIMLLTP--NGRFEIGKKICLSMSAHHPETWQPSWSIRTVLMAI 115
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 270 IPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPL---FHPNVYPSGTVCLS 422
I G GTP++ GL+ ++ +YP +PP + +PN+Y G VC++
Sbjct: 640 IEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPNLYEDGKVCIT 693
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +3
Query: 231 PDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPK 359
P G +L W I G G+ +EGG++ L + F DYP PPK
Sbjct: 159 PKGD-DLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPPK 200
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 231 PDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPK 359
P G L W I G G+ +EGG++ L + F DYP PPK
Sbjct: 46 PKGD-KLYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPK 87
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 35.5 bits (78), Expect = 0.046
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 270 IPGKKGTPWEGGLYKLRMIFKDDYPSSPPK 359
I G TP+EGG Y L ++ + YP +PPK
Sbjct: 693 IRGPPETPFEGGTYNLDIVIPETYPFNPPK 722
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 35.1 bits (77), Expect = 0.061
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -1
Query: 255 SLNSMNHLDSS*ASRQNQRDGPYAKLSVLQLNVHLLSLTFSTKITRFMSRAS 100
+L + L S S++N+ D P L++ LN HL ++ ++T+FM + +
Sbjct: 2865 ALTGSSRLRSPSGSKRNKEDSPNVPLTLSDLNNHLNTINLQVEVTKFMHKCA 2916
>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
Length = 48
Score = 34.7 bits (76), Expect = 0.081
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 444 WRPAITIKQILLGIQDLLNEPNVKDP 521
W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 3 WSPALQIRTVLLSIQALLSAPNPDDP 28
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 246 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPP 356
NL W + G T + GG Y R+I +YP PP
Sbjct: 2 NLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPP 38
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 32.3 bits (70), Expect = 0.43
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 276 GKKGTPWEGGLYKLRMIFKDDYPSSPP 356
G GTP+EGG++K+R+ + YP P
Sbjct: 56 GPVGTPYEGGVWKVRVDLPEKYPFKSP 82
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 315 LRMIFKDDYPSSPPKCKFEPPLFHPN-VYPSGTVCLSLLDEEKDWRPAITIKQILL 479
L + F +++P +PP + P V G +C+ LL K W A T++ ++L
Sbjct: 793 LNITFPENFPFAPPFMRVLAPRIEGGFVLDGGAICMELL-TPKGWSSAYTVEAVVL 847
>SB_34490| Best HMM Match : CUB (HMM E-Value=1.3e-07)
Length = 242
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 384 HPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIY 548
+PN YP+ C + + + ITI L + D L+ NVK AE Y
Sbjct: 159 YPNSYPNNMDCRWTIIVQAGFIVRITIAVFELAVNDFLHTSNVKSAQAAEGNKTY 213
>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
Length = 484
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 354 PKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 497
P C P +PNV + TVC+ L E DW ++ + L I +L
Sbjct: 165 PNCTMCPIKQYPNV--NRTVCIDLPLENLDWTSLVSASMLALAITAML 210
>SB_9360| Best HMM Match : CUB (HMM E-Value=2.5e-35)
Length = 275
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 384 HPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIY 548
+PN YP+ C + + + IT+ L + D L+ NVK AE Y
Sbjct: 192 YPNSYPNNMDCRWTIIVQAGFIVRITVAVFELAVNDFLHMSNVKSTQAAEGNKTY 246
>SB_33052| Best HMM Match : Ribosomal_S3_C (HMM E-Value=4.2)
Length = 260
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 663 RQWLSSLTLHCPILIFTQQQPL 598
R+WL S+TL+CP+L T + L
Sbjct: 178 REWLHSITLNCPLLNLTASKNL 199
>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
Length = 603
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 280 KRGLHGKVGCI-NYV*SSKMIIHQVLQNA 363
K+ LHGKVGCI + + S+ ++IH + A
Sbjct: 350 KQNLHGKVGCILSIIGSTVLVIHAPQEEA 378
>SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)
Length = 583
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 438 KDWRPAITIKQILLGIQDLLNEPNVKDP 521
K + ITIK L ++D+L +P VK P
Sbjct: 377 KSLKNFITIKDFFLAVKDILRKPEVKAP 404
>SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5)
Length = 674
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 336 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAI 458
D + P C F +F +P V LS+ D+E+ WR ++
Sbjct: 60 DATTDAPACFFYKEIFR--AFPYAKVILSVRDDEESWRRSL 98
>SB_9616| Best HMM Match : PTS_IIB_fruc (HMM E-Value=2.3)
Length = 462
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -3
Query: 508 LGSLRRS*IPNKICFIVIAGRQSFSSSSSDKHTVPDG 398
LGSL + +P++I + AGR++F +S+ K VP G
Sbjct: 69 LGSLAKGLVPSEIRDLANAGRETFEAST--KGLVPSG 103
>SB_59414| Best HMM Match : Complex1_LYR (HMM E-Value=7.7)
Length = 350
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 336 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWR 449
D + P C F +F +P V LS+ D+E+ WR
Sbjct: 60 DATTDLPACIFYKEIF--KAFPDAKVILSVRDDEESWR 95
>SB_28044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = -3
Query: 361 HFGGLDG*SSLKIIRSLYSPPSHGVPFLPGIA-HSQVIKFNE--PSGFFIGLATKPKGWS 191
H + G +L + +L P+H G+ H + FN P F G+ +
Sbjct: 506 HVKIMSGPKALPAVYTLARTPTHSRIIARGVMNHIETDLFNGLIPQCFVFGMLYQDTS-- 563
Query: 190 LRQAFRSSAKRALAIPDIFYKNNS 119
Q +RS+ K++ I ++YKN +
Sbjct: 564 --QLYRSTPKKSYLIKSLYYKNKA 585
>SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 288 TPWEGGLYKLRMIFKDDYPSSPPKCKF 368
T +E +Y L+++ +YP PP KF
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKF 27
>SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 288 TPWEGGLYKLRMIFKDDYPSSPPKCKF 368
T +E +Y L+++ +YP PP KF
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKF 27
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,923,558
Number of Sequences: 59808
Number of extensions: 474978
Number of successful extensions: 1109
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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