Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0328
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   7.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 240 SLNLMTWECAIPGKKGTPWEGGLYKL 317
           + +L+ +E  +  K+  PWE   YKL
Sbjct: 110 TFSLLYYEFDVATKEPPPWETDSYKL 135


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 615  TQQQPLHVPALLLACHTL 562
            TQQQP+ +P+ LL   TL
Sbjct: 1236 TQQQPIILPSQLLNIKTL 1253


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 318 VVYTAHLPMESPF 280
           V YTA +PM SPF
Sbjct: 154 VFYTAVIPMFSPF 166


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 130 KNNSIYEPSFNQGLFLMLGDRF 65
           K + +  PS+N  +F M+G  F
Sbjct: 198 KEHHLEGPSYNSDIFAMIGTIF 219


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 279  KKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLF 383
            K G     G  + R +FKD  P++    +  PP +
Sbjct: 1238 KTGVSTLRGQERQRSLFKDSSPATALMLQHAPPAY 1272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,004
Number of Sequences: 438
Number of extensions: 4504
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)