Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0327
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 136 2e-32
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 131 4e-31
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 94 8e-20
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 60 2e-09
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 60 2e-09
05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866 33 0.28
07_03_0039 - 12718972-12720699 29 2.6
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 28 6.0
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 7.9
08_02_1398 + 26760069-26760267,26760349-26760635,26762394-267625... 28 7.9
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.9
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 136 bits (329), Expect = 2e-32
Identities = 61/114 (53%), Positives = 84/114 (73%)
Frame = +3
Query: 66 SNTKKNIHLRRERLRAKKSAGKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYF 245
S+ K + L R + A + KY DR+PVIVEKA ++ + D+DKKKYLVP+DLTVGQF +
Sbjct: 4 SSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVY 63
Query: 246 LIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 407
++RKRI L PE A+F FV N +PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 64 VVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 131 bits (317), Expect = 4e-31
Identities = 57/107 (53%), Positives = 80/107 (74%)
Frame = +3
Query: 90 LRRERLRAKKSAGKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHL 269
L R + + + KY DR+PVIVEKA K + ++DKKKYLVP+DLTVGQF +++RKRI L
Sbjct: 176 LERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKL 235
Query: 270 RPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 410
PE A+F FV N +PPT++ M ++Y+E+ DED FLY+ +S EN +G+
Sbjct: 236 SPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 282
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 94.3 bits (224), Expect = 8e-20
Identities = 39/69 (56%), Positives = 54/69 (78%)
Frame = +3
Query: 201 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYI 380
+YLVP+DLTVGQF +++RKRI L E A+F FV N +PPT+A M ++Y+E+ DED FLY+
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYM 1943
Query: 381 AFSDENVYG 407
+S EN +G
Sbjct: 1944 TYSGENTFG 1952
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +3
Query: 96 RERLRAKKSAGKYPDRVPVIVEKAPKARLGDLDKKK 203
R + A + KYPDR+PVIVEKA ++ + D+DKKK
Sbjct: 1807 RRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 252 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 407
++++HL P ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 221 KRKLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 252 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 407
++++HL P ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87
>05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866
Length = 640
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 496 YYFMVFFLLLIGI*YYF-CLHMNSIKLFK 579
YY++V FLL++ + YYF C H ++K F+
Sbjct: 576 YYWLVTFLLVLNLAYYFVCFHFYTLKSFE 604
>07_03_0039 - 12718972-12720699
Length = 575
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 210 VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV-IPPTS 323
VPS L F L+R+ + P + L FF+ ++ +PPT+
Sbjct: 80 VPSSLRTSAFPSLLRRHLAFHPLNELPFFLESIGLPPTT 118
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +2
Query: 362 RFLFIHSIFRRKCLW------KLIPNYSLSNSFTLSDHMVKFN 472
RF+F+ S++ + + KLI N+SL+ + + DH + FN
Sbjct: 1350 RFVFLDSLYDEESFYHAELRPKLISNFSLAWNLYVQDHSIDFN 1392
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 401 LWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCII 502
LW+L+ +SL S + +++SL LK C +
Sbjct: 335 LWELVERHSLEREVFSSFKQIYYDMSLMLKSCFL 368
>08_02_1398 +
26760069-26760267,26760349-26760635,26762394-26762591,
26762819-26762845
Length = 236
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 232 PTVKSDGTKYFFLSRSPSLAFGAFSTITGTRSGYXPA 122
P SDG KYFF R P+ A G +T + + PA
Sbjct: 66 PGASSDGDKYFFAVRPPA-ARGRRQHVTASGGCWKPA 101
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 387 KMLCIKRNLHHGVLDRETPLLQMWVE*HCSRRRKVRLQAAGE 262
+++C ++N+ VLD E +L W C + ++ L AG+
Sbjct: 709 ELVCCRKNVELEVLDEEQTILTYWAN-DCYKCGRIDLLVAGD 749
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,603
Number of Sequences: 37544
Number of extensions: 304384
Number of successful extensions: 655
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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