Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0327
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)                   198   5e-51
SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)                    84   1e-16
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    31   1.1  
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
          Length = 119

 Score =  198 bits (482), Expect = 5e-51
 Identities = 91/111 (81%), Positives = 98/111 (88%)
 Frame = +3

Query: 75  KKNIHLRRERLRAKKSAGKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIR 254
           K+     + R   +K   KYPDRVPVIVEKAPKAR+GDLDKKKYLVPSDLTVGQFYFLIR
Sbjct: 6   KEEHPFEKRRAEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIR 65

Query: 255 KRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 407
           KRIHLRPEDALFFFVNNVIPPTSATMG LYQEHH+EDFFLYIA+SDE+VYG
Sbjct: 66  KRIHLRPEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +2

Query: 59  MKFQYKEEHSFEKRKAEGEK 118
           MK++YKEEH FEKR+AEGEK
Sbjct: 1   MKWEYKEEHPFEKRRAEGEK 20


>SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
          Length = 140

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
 Frame = +3

Query: 75  KKNIHLRRERLRAKKSAGKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFLI 251
           +K+   RR+ +   ++  K+P ++PVIVE+  K + L  LDK K+LVP +LT+ QF  +I
Sbjct: 17  RKSFVSRRDEVAGIRA--KFPSKIPVIVERYHKEKDLPLLDKTKFLVPQELTMSQFVTII 74

Query: 252 RKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 410
           R R+ L    A +  VNN  +   S TM  LY+E  DED FLY+ ++ + ++G+
Sbjct: 75  RNRMSLSSTQAFYLIVNNKSLASMSMTMAELYREEKDEDGFLYMVYASQEMFGS 128


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 78  KNIHLRRERLRAKKSAGKYPDRVPVIVEKAPKARLGDLDKKKYL 209
           KN H+R E + A K A +   R  +  EKA K  L ++ KK+ L
Sbjct: 848 KNSHIRSEAVLAAKLAARKRLRAEMAKEKAMKNELKEMGKKQIL 891


>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 401 DIFVGKC-YV*KEIFIMVFLIERPHCCRCGWNDIVHEEEKCVFRPQVNTFPDQE 243
           D+ VG C Y      +   L +RP       +++V ++++ VF+P  +T  DQ+
Sbjct: 132 DLAVGYCQYDHLASVLTQLLTDRPEASTEILDELVRDKKRAVFKPNFDTIQDQQ 185


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 141 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLR 272
           RV   + +     + + D K YL P D   G+FY L   +IH+R
Sbjct: 214 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYIL--PKIHIR 255


>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -1

Query: 440 NYLKVNNLELISIDIFVGKCYV*KEIFIMVFLIERPHCCRCGWNDIVHEEEK 285
           N L+ NN +L +  +F G C+V K + IM FL+    C R   +  + +++K
Sbjct: 586 NCLEYNNTQL-AYTVF-GLCFVCKLVVIMGFLVSYLSCRRINKSTRLRQDDK 635


>SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 138 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 275
           +RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 81  ERVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,612,406
Number of Sequences: 59808
Number of extensions: 374493
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)