Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0327
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...   179   1e-45
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...   179   1e-45
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    69   2e-12
AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score =  179 bits (436), Expect = 1e-45
 Identities = 82/111 (73%), Positives = 92/111 (82%)
 Frame = +3

Query: 75  KKNIHLRRERLRAKKSAGKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIR 254
           K+  +  + R    K   KYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQFYFLIR
Sbjct: 6   KEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIR 65

Query: 255 KRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 407
           KRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 66  KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = +2

Query: 59  MKFQYKEEHSFEKRKAEGEK 118
           MK+ YKEE++FEKR+AEG+K
Sbjct: 1   MKWAYKEENNFEKRRAEGDK 20


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score =  179 bits (436), Expect = 1e-45
 Identities = 82/111 (73%), Positives = 92/111 (82%)
 Frame = +3

Query: 75  KKNIHLRRERLRAKKSAGKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIR 254
           K+  +  + R    K   KYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQFYFLIR
Sbjct: 6   KEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIR 65

Query: 255 KRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 407
           KRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 66  KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = +2

Query: 59  MKFQYKEEHSFEKRKAEGEK 118
           MK+ YKEE++FEKR+AEG+K
Sbjct: 1   MKWAYKEENNFEKRRAEGDK 20


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 35/113 (30%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
 Frame = +3

Query: 75  KKNIHLRRERLRAKKSAGKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFLI 251
           ++  H R++ +   +S  + P++VPVI+E+    R L  +D+ K+LVP  +TV +   ++
Sbjct: 20  RRPFHERQKDVEEIRS--QQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIV 77

Query: 252 RKRIHLRPEDALFFFVN-NVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 407
           R+R+ L P+ A F  VN   +   S +M +LY +  D D F+Y+ ++ +  +G
Sbjct: 78  RRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130


>AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical
           protein C30E1.6 protein.
          Length = 247

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 437 SFTLSDHMVKFNLSLRLKLCIILWYFFY 520
           SFT+ +  + F++ L  KL +++++FFY
Sbjct: 116 SFTIPNFSISFSIFLWAKLQVLIYFFFY 143


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 122 GFFRPQPFSSQMNVLLCIGISC*YFITHCNF 30
           G   P   SS MN+LL   +S   F  HC +
Sbjct: 356 GIISPSNSSSSMNLLLIFAVSTLIFSAHCQY 386


>Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical
           protein F15H9.1 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 140 IWIFXCGFFRPQPFSSQMNV 81
           IWI  CGF   QP S + N+
Sbjct: 8   IWIIACGFNNTQPLSYEENI 27


>Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK858.6 protein.
          Length = 619

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 63  NSNTKKNIHLRRERLRAKKSAGKYPDRVPVIVEKAPKARLGDL 191
           N  +K+N+ L +ER+R + SA    D +PV     P A+ GD+
Sbjct: 106 NKLSKENVALFKERIRQEYSAHLIVDNLPVATVINP-AQSGDV 147


>Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical
           protein F46B6.7 protein.
          Length = 614

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 345 QEHHDEDFFLYIAFSDENVYGN*FQIIHFQIVLHYLTI 458
           +E  D  F L   F   N  GN  +IIH   ++H+L +
Sbjct: 296 REREDTSFQLQCIFCRYNARGNRSKIIHHLYMIHHLNL 333


>U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical
           protein B0507.7 protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = -3

Query: 417 GINFHRHFRRKMLCIKRNLHHGVLDRETPLLQMWVE*HCSRRRKVRLQAAGEYVSGS--R 244
           G++ +    +K+L + + LHH +LD E  L  +  +    ++ ++  Q    +VS +  R
Sbjct: 182 GLSKYADKNQKILNLNQELHHTILDGENRLGHINEDRFEDQKNQLEKQDDTCFVSKNHRR 241

Query: 243 SRTGQLLNQTELN 205
            R G+ L  TE++
Sbjct: 242 MRIGEALLDTEMD 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,605
Number of Sequences: 27780
Number of extensions: 306229
Number of successful extensions: 910
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)