Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0325
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 308 7e-85
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 171 9e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 158 9e-40
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 119 5e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 92 9e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 87 2e-18
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 47 2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.010
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.096
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.17
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.39
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.2
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 28 1.6
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 27 3.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.3
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 26 6.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 308 bits (755), Expect = 7e-85
Identities = 140/152 (92%), Positives = 146/152 (96%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 267
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 268 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 447
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 448 IMFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
I+FETFN PA YVAIQAVLSLYA GRTTGIVL
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVL 153
Score = 67.3 bits (157), Expect = 2e-12
Identities = 33/51 (64%), Positives = 39/51 (76%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQTTSEDPHPERGYSFTTT 697
DSGDGV+HTVPIYEGYALPHAI+RLDLA + + ERGY+F+TT
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMK-ILMERGYTFSTT 203
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 171 bits (416), Expect = 9e-44
Identities = 78/147 (53%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 285
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 286 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 462
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 463 FNTPAMYVAIQAVLSLYAXGRTTGIVL 543
N PA+ ++Q VL+LYA RTTGIVL
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVL 158
Score = 36.3 bits (80), Expect = 0.004
Identities = 12/22 (54%), Positives = 20/22 (90%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAI 610
+ GDG++H+VPIY+G+++P AI
Sbjct: 159 ECGDGLTHSVPIYDGFSIPSAI 180
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 158 bits (383), Expect = 9e-40
Identities = 74/152 (48%), Positives = 108/152 (71%), Gaps = 2/152 (1%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 267
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 268 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 447
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 448 IMFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
MFE + +YVAIQAVLSLYA G ++G+V+
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVV 153
Score = 42.3 bits (95), Expect = 7e-05
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLA-RSPTSQTTSEDPHPERGYSFTTT 697
DSGDGV+H VP+YE L H + RLD+A R T S +GY+F T
Sbjct: 154 DSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLIS--LLLRKGYAFNRT 203
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 119 bits (286), Expect = 5e-28
Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 24/161 (14%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 234
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 235 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 393
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 394 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 516
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L A
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAA 167
Score = 35.9 bits (79), Expect = 0.006
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLA 628
DSGDGV+H +P+ EGY + +I + LA
Sbjct: 185 DSGDGVTHIIPVAEGYVIGSSIKTMPLA 212
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 94.3 bits (224), Expect = 2e-20
Identities = 52/153 (33%), Positives = 82/153 (53%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 270
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 271 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 450
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 451 MFETFNTPAMYVAIQAVLSLYAXGRTTGIVLGL 549
MFE+ PA Y+A Q + +A G+ T ++ +
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDI 153
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 91.9 bits (218), Expect = 9e-20
Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 285
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 286 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 462
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 463 FNTPAMYVAIQAVLSLYAXGR--TTGIVLGL 549
+N P++ I + S Y + ++GIVL L
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNL 172
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 87.0 bits (206), Expect = 2e-18
Identities = 45/155 (29%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 270
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 271 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 444
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 445 QIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLGL 549
+ FE + PA Y+ QAV +A ++T +++ +
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +1
Query: 292 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 459
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 460 TFNTPAMYVAIQAVLSLYAXGRTTGIVLGL 549
P +A + ++ LYA G G+V+ +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDI 201
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.1 bits (77), Expect = 0.010
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 285
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 286 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 453
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 454 FETFNTPAMYVAIQAVLSLYAXGRTT 531
FE F A A L + G T
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFT 143
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.096
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 352 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 495
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 151 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 294
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.39
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 248 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 87
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 259 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 170
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 530 PVSCWDSGDGVSHTVPIYEGYALPHAILRLD-LARSPTSQTTSED 661
PVS D G +HT+P Y GYA ++ + D + T+Q +E+
Sbjct: 364 PVSMGDYASGTNHTLPTY-GYASSYSGVSTDSFLKYITTQELTEE 407
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -3
Query: 288 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 109
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 639 PHRLPLKILTRSAXTRSLPPAERENRS 719
PH +P +L R R+LP +E E RS
Sbjct: 348 PHGIPTDLLDRLLIVRTLPYSESEIRS 374
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 251 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 135
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 394 LLTEAPLNPKANREKMTQIMFETFN 468
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 516 VRSYHRYRAGTPATVSPTPCPSTKDTHSPTPSCVWT*PGPRPHRLP 653
V++Y AGTP + S P P + + P P V + P P +P
Sbjct: 213 VKAYLNESAGTPTSTSAPPIPPSIPSSRP-PERVPSLSAPAPPPIP 257
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 288 FEGQDTSFALCLISYIRVLLSHTDHHA 208
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 524 VPPVSCWDSGDGVSHTVPIYEG 589
+ PV+ W S D SH V I EG
Sbjct: 231 INPVALWKSSDISSHNVSIKEG 252
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 540 AGTPATVSPTPCPSTKDTHSPTPSCVWT*PGPRPHRLP 653
+G P+ P P PS++ P PS P P P +P
Sbjct: 1057 SGAPSAPPPVPAPSSEIPSIPAPS--GAPPVPAPSGIP 1092
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 8.4
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +2
Query: 533 VSCWDSGDGVSHTVPIYEGYALP 601
+ + +G G+ H + + +GYA+P
Sbjct: 152 IDFYPAGRGIGHQIMVEQGYAMP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,195
Number of Sequences: 5004
Number of extensions: 73756
Number of successful extensions: 239
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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