Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0325
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 324 4e-89
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 320 1e-87
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 320 1e-87
SB_56| Best HMM Match : Actin (HMM E-Value=0) 318 3e-87
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 317 7e-87
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 2e-46
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 2e-37
SB_54| Best HMM Match : Actin (HMM E-Value=0) 104 8e-23
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 91 1e-18
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 77 2e-14
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 71 7e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 57 2e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 4e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 41 0.001
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 36 0.044
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 32 0.55
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.72
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.72
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 0.96
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.96
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5) 31 1.3
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 1.3
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1) 31 1.3
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 1.3
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 30 1.7
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.7
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 30 1.7
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.7
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44) 30 2.2
SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2) 30 2.2
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 29 3.9
SB_35969| Best HMM Match : B56 (HMM E-Value=3.1) 29 3.9
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 3.9
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 3.9
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 5.1
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 28 6.7
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_12126| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 28 6.7
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 28 6.7
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 28 8.9
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 28 8.9
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 324 bits (796), Expect = 4e-89
Identities = 149/154 (96%), Positives = 153/154 (99%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 261
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 441
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 442 TQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
TQIMFETFN+PAMYVAIQAVLSLYA GRTTGIV+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 154
Score = 71.3 bits (167), Expect = 7e-13
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQTTSEDPHPERGYSFTTT 697
DSGDGV+HTVPIYEGYALPHAILRLDLA + + ERGYSFTTT
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK-ILTERGYSFTTT 204
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 320 bits (785), Expect = 1e-87
Identities = 148/154 (96%), Positives = 152/154 (98%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 261
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 441
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 442 TQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
TQIMFETFN+PAMYVAIQAVLSLYA GRTTGIV+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 154
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/51 (68%), Positives = 39/51 (76%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQTTSEDPHPERGYSFTTT 697
DSGDGV+HTVPIYEGYALPHAI+RLDLA + + ERGYSFTTT
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMK-ILTERGYSFTTT 204
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 320 bits (785), Expect = 1e-87
Identities = 146/154 (94%), Positives = 152/154 (98%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 261
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 441
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 442 TQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
TQIMFETFN+PAMYVAIQAVLSLYA GRTTGIV+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 154
Score = 35.1 bits (77), Expect(2) = 0.002
Identities = 16/19 (84%), Positives = 17/19 (89%), Gaps = 2/19 (10%)
Frame = +2
Query: 545 DSGDGVSHTVPIYE--GYA 595
DSGDGVSHTVPIYE GY+
Sbjct: 155 DSGDGVSHTVPIYEERGYS 173
Score = 23.8 bits (49), Expect(2) = 0.002
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2
Query: 665 HPERGYSFTTT 697
+ ERGYSFTTT
Sbjct: 167 YEERGYSFTTT 177
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 318 bits (781), Expect = 3e-87
Identities = 147/152 (96%), Positives = 151/152 (99%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 267
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 268 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 447
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 448 IMFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
IMFETFN+PAMYVAIQAVLSLYA GRTTGIV+
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 153
Score = 71.3 bits (167), Expect = 7e-13
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQTTSEDPHPERGYSFTTT 697
DSGDGV+HTVPIYEGYALPHAILRLDLA + + ERGYSFTTT
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK-ILTERGYSFTTT 203
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 317 bits (778), Expect = 7e-87
Identities = 146/152 (96%), Positives = 151/152 (99%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 267
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 268 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 447
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 448 IMFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
IMFETFN+PAMYVAIQAVLSLYA GRTTGIV+
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 153
Score = 71.3 bits (167), Expect = 7e-13
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQTTSEDPHPERGYSFTTT 697
DSGDGV+HTVPIYEGYALPHAILRLDLA + + ERGYSFTTT
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK-ILTERGYSFTTT 203
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 183 bits (445), Expect = 2e-46
Identities = 83/89 (93%), Positives = 86/89 (96%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 267
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 268 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 354
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/51 (68%), Positives = 39/51 (76%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQTTSEDPHPERGYSFTTT 697
DSGDGV+HTVPIYEGYALPHAI+RLDLA + + ERGYSFTTT
Sbjct: 117 DSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMK-ILTERGYSFTTT 166
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = +1
Query: 427 NREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
N + M +IMFETFN+PAMYVAIQAVLSLYA GRTTGIV+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 116
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 152 bits (369), Expect = 2e-37
Identities = 72/151 (47%), Positives = 101/151 (66%), Gaps = 3/151 (1%)
Frame = +1
Query: 100 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 273
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 274 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 450
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 451 MFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
MFE + +Y+AIQAVL+LYA G TG+V+
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVI 157
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLA 628
DSGDGV+H P+YEG+ALPH RLD+A
Sbjct: 158 DSGDGVTHICPVYEGFALPHLTRRLDIA 185
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 104 bits (249), Expect = 8e-23
Identities = 47/69 (68%), Positives = 57/69 (82%)
Frame = +1
Query: 334 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 513
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 514 AXGRTTGIV 540
A GRTTG V
Sbjct: 2189 ASGRTTGTV 2197
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = +2
Query: 542 WDSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQTTSEDPHPERGYSFTTT 697
+D GDGVSHTVP+Y+GY LPHA R+DLA + + ERGYSF +T
Sbjct: 2198 FDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYL-QRLVTERGYSFQST 2248
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 90.6 bits (215), Expect = 1e-18
Identities = 38/54 (70%), Positives = 48/54 (88%)
Frame = +1
Query: 382 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVL 543
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA GRTTG+VL
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVL 179
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/34 (61%), Positives = 29/34 (85%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQ 646
D+GDGVSH+VPIYEG+A+PH+I+R D+A S+
Sbjct: 180 DAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSR 213
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 76.6 bits (180), Expect = 2e-14
Identities = 31/84 (36%), Positives = 55/84 (65%)
Frame = +1
Query: 292 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 471
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 472 PAMYVAIQAVLSLYAXGRTTGIVL 543
PA ++ +VL+ +A GR+ G+V+
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVI 86
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLA 628
DSG + VP+++GY L AI+R LA
Sbjct: 87 DSGATQTSAVPVHDGYVLQQAIVRSPLA 114
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 71.3 bits (167), Expect = 7e-13
Identities = 36/52 (69%), Positives = 39/52 (75%)
Frame = +2
Query: 542 WDSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQTTSEDPHPERGYSFTTT 697
+DSGDGVSH VPIYEGYALPHAILRLDLA + + ERGYSFTTT
Sbjct: 32 FDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMK-LMTERGYSFTTT 82
Score = 57.6 bits (133), Expect = 1e-08
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +1
Query: 448 IMFETFNTPAMYVAIQAVLSLYAXGRTTGIV 540
IMFE FN+PA+YVAIQAVLSLYA GRTTG+V
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVV 31
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +1
Query: 76 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 246
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 247 GDEAQSKRGILTL 285
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 539 CWDSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQTTSEDPHPERGYSFTTT 697
C SG + IYEG+ L H + L++ ++ + +RG++FT++
Sbjct: 782 CLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQRGHNFTSS 834
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +1
Query: 220 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 399
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 273
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 274 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 363
L Y P + G + NWD ++IW +TF E
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 204 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 88
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +1
Query: 337 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 516
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 517 XGRTTGIV 540
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 35.5 bits (78), Expect = 0.044
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 545 DSGDGVSHTVPIYEGYALPHAILRLDLA 628
DSGDGV+H +P+ EGY + I + +A
Sbjct: 67 DSGDGVTHVIPVAEGYVIGSCIKHIPIA 94
>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 561 SPTPCPSTKDTHSPTPSCVWT*PGP-RPHRLPLKILTRSAXTRSLPP 698
+P+P P ++SP P+C G +PH +PL + RS S PP
Sbjct: 134 TPSPLPRPHMSYSPRPTCNTIPKGANQPHPIPLPPIHRSEACCSPPP 180
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 424 ANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIV 540
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.72
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 283 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 435
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 327 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 151
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 193 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 251
Query: 150 CETGLAHT 127
CET L T
Sbjct: 252 CETQLVPT 259
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 327 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 151
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 251 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 309
Query: 150 CETGLAHT 127
CET L T
Sbjct: 310 CETQLVLT 317
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 327 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 151
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 71 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 129
Query: 150 CETGLAHT 127
CET L T
Sbjct: 130 CETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 327 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 151
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 105 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 163
Query: 150 CETGLAHT 127
CET L T
Sbjct: 164 CETQLVLT 171
>SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)
Length = 491
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = -2
Query: 622 VQTQDGVGECVSFVDGHGVGDTVAGVPARYRWYDRTRTARAR 497
V DGVG CV DG G D P YDR R +R+R
Sbjct: 211 VDNDDGVGGCVDNDDGGGAADLQLRHPDP---YDRVRLSRSR 249
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 327 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 151
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 388 VVPVFKKSGKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 446
Query: 150 CETGLAHT 127
CET L T
Sbjct: 447 CETQLVLT 454
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 327 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 151
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 229 VVPVFKKSGKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 287
Query: 150 CETGLAHT 127
CET L T
Sbjct: 288 CETQLVLT 295
>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 440
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Frame = +2
Query: 455 SKHSTRPPCTXPSKPCSRCTRXVVPPVSCWDSGDGVSHT--VPIYEGYALPHAILRLDLA 628
S+ S+R P P T PP C SG+G + T P + +A
Sbjct: 290 SQESSRSHSASPCYPIMAGTTDSKPPSRC-SSGEGPTMTDSAPTDGSNGIENASADESTI 348
Query: 629 RSPTSQTTSEDPHPERGYSF 688
P+SQ + P P + Y+F
Sbjct: 349 DPPSSQKYASSPKPNKSYTF 368
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 327 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 151
V+PV S D + S +C ++LSH + H M D +HG RS S
Sbjct: 153 VVPVFKKSSKDNPENYRPISLTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFS 211
Query: 150 CETGLAHT 127
CET L T
Sbjct: 212 CETQLVLT 219
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -3
Query: 354 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 187
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 210 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 268
Query: 186 DRGEHGARSIISCETGLAHT 127
+HG R +SCET L T
Sbjct: 269 SIFQHGFRQALSCETQLVLT 288
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -3
Query: 354 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 187
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 71 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 129
Query: 186 DRGEHGARSIISCETGLAHT 127
+HG R +SCET L T
Sbjct: 130 SIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -3
Query: 354 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 187
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 1609 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 1667
Query: 186 DRGEHGARSIISCETGLAHT 127
+HG R +SCET L T
Sbjct: 1668 SIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -3
Query: 354 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 187
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 637 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 695
Query: 186 DRGEHGARSIISCETGLAHT 127
+HG R +SCET L T
Sbjct: 696 SIFQHGFRQALSCETQLVLT 715
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -3
Query: 354 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 187
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 1047 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 1105
Query: 186 DRGEHGARSIISCETGLAHT 127
+HG R +SCET L T
Sbjct: 1106 SIFQHGFRQALSCETQLVLT 1125
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -3
Query: 354 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 187
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 71 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 129
Query: 186 DRGEHGARSIISCETGLAHT 127
+HG R +SCET L T
Sbjct: 130 SIFQHGFRQALSCETQLVLT 149
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 408 SPQPQGQQREDDPDHVRNIQHARHVRXHPSR 500
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 261 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 127
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
Length = 667
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 534 YRAGTPATVSPTPCPSTKDTHSPTPSCVWT*PGPRP 641
YR GT AT PTP P+ T PT T P P+P
Sbjct: 423 YRCGT-ATPPPTPPPTPPPTPPPTTLPPTTQPPPQP 457
>SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)
Length = 610
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 492 PSRALAVRVRSYHRYRAGTPA-TVSPTPCPSTKDTHSPTPSCVWT*PGPRPHRLPLKILT 668
PSR ++++ R+ A T++ P P + DT SPTP T PR P + T
Sbjct: 307 PSRLVSLQNSPVKMMRSTLSAQTLAENPIPESTDTTSPTPPLTDT-KSPRTPEKPAPLPT 365
Query: 669 R 671
R
Sbjct: 366 R 366
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = +3
Query: 531 RYRAGTPATVSPTPCPSTKDTHSPTPSCV--WT*P---GPRPHRLPLKILTRSAXTRSLP 695
R RA SPTP S +P+P W+ P + H LP ++ + +R LP
Sbjct: 30 RLRAHFRVQHSPTPRSSPPKAATPSPKITRSWSSPLFNRRQAHALPRTSVSNTGQSRQLP 89
Query: 696 PAER 707
P+ R
Sbjct: 90 PSYR 93
>SB_35969| Best HMM Match : B56 (HMM E-Value=3.1)
Length = 174
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 531 RYRAGTPATVSPTPCPSTKDTHSPTPSCVWT*PGPR 638
+ RA TPA +P P+ K P PS T P +
Sbjct: 25 KLRAATPAKAAPKKTPAKKSAKKPAPSVKKTAPNDK 60
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 327 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 151
V+PV S D + S +C ++LSH + H L A +HG R +S
Sbjct: 204 VVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALS 262
Query: 150 CETGLAHT 127
CET L T
Sbjct: 263 CETQLVLT 270
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 327 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 151
V+PV S D + S +C ++LSH + H L A +HG R +S
Sbjct: 2 VVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALS 60
Query: 150 CETGLAHT 127
CET L T
Sbjct: 61 CETQLVLT 68
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.7 bits (61), Expect = 5.1
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -3
Query: 267 FALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQR 103
FA CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 462 FATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKH 520
Query: 102 GNFFVAHLE 76
G V L+
Sbjct: 521 GQVDVLLLD 529
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 473 PPCTXPSKPCSRCTRXVVPPVSCWDSGDGVSH 568
PP P P T +PP SC + +G S+
Sbjct: 973 PPLPPPPPPVQTTTAPTLPPASCMPTHEGTSN 1004
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 561 SPTPCPSTKDTHSPTPSCVWT*PGP 635
+PTP P K T +PTPS T P P
Sbjct: 223 APTPPPPVKTTAAPTPSPPQTPPPP 247
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_12126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 470 RPPCTXPSKPCSRCTRXVVPPVSCWDSG--DGVSHTVPIY 583
R P PS+ C R R VV V W S + V H+ P Y
Sbjct: 46 REPRETPSQECLRLRRLVVMSVLLWWSPTCESVGHSFPYY 85
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 817
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 562 LPHRAHLRRIRTPPRHPASGLSPVPDLT 645
L +++HL+ + TPP PA ++P P T
Sbjct: 286 LSNKSHLKILDTPPAKPAPPVAPKPHAT 313
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 550 RRRCLPHRAHLR-RIRTPPRHPASGLSPVPDLTDYL*RSS 666
RR P++ H R + RTPPRH SP + D RSS
Sbjct: 76 RRSRSPNKKHSRSKSRTPPRHRRRSRSPRRESIDRKRRSS 115
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Frame = +3
Query: 435 EDDPDHVRNI--QHARHVRXHPSRALAVRVRSYHRYRAGTPATV-----SPTPCPSTKDT 593
E P NI +H H H + RV S +A PA V +P P P T
Sbjct: 599 ETKPVGAHNIAGEHPCHPSQHVTDPGIDRVPSRRPSKAFAPAKVHAEGAAPAPSPRTHAA 658
Query: 594 HSPTPSCVWT*PGP 635
HS T + + PGP
Sbjct: 659 HSMTAAGAASAPGP 672
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 546 TPATVSPTPCPSTKDTHSPTPSCVWT*PGPRPHRLPLKILTRSAXTRSLP 695
TP +PTP T T +PT S + T P P P K T +A T + P
Sbjct: 68 TPTPATPTPTTPTPKTPTPTTSTL-TKPTPATTPTPTK-PTPTAHTPTTP 115
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 412 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIV 540
+ PK ++ ++F F P M +A++ + A G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 488 PSKPCSRCTRXVVP--PVSCWDSGDGVSHTVPIYEGYALPHAILRLDLARSPTSQT 649
P++PCS CT+ +P P C D + +Y + + L + P + T
Sbjct: 220 PTEPCSLCTKPALPPEPKDCVSDPDDALYVERVYCAHVFHYGCLDKYMKTPPFTGT 275
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 546 TPATVSPTPCPSTK--DTHSPTPSC--VWT*PGPRPHRLPLKILTRSAXTRS 689
T T PT P+T TH PT + T P PR +L +K+L R A RS
Sbjct: 584 TTTTGHPTKTPTTTSGPTHPPTTTARPTSTAPAPRKAQLSVKLL-RGAELRS 634
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,361,432
Number of Sequences: 59808
Number of extensions: 682263
Number of successful extensions: 2240
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2209
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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