Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0322
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.2  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   2.9  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   5.0  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   6.6  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    25   8.7  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 678  NFVFKIHKIDYKKIYSFKTTQVQMSHLPERTFL 580
            N V K HK+D K I SFKT +  M  L    F+
Sbjct: 935  NPVLKFHKLDGKIIDSFKTVEHYMEVLQPMIFM 967


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 445 RYKIGSFFFFKYCFY*MLVVVARCSNTERGFR 540
           RY      FF  CF  ML VV +CS+    FR
Sbjct: 19  RYFHSFHCFFLLCFTVMLCVVQQCSSAMTSFR 50


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 359 GAINRSSYDLFSENVVLFVFSM 294
           G++++ SY+LFS++   FV+ M
Sbjct: 3   GSVDKPSYELFSKDTRAFVYGM 24


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect(2) = 6.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 483 TIFKKKERTYLIPLNEQFLYI*YESRKQLQRF 388
           T+F+ K + +L+P N +  ++     K L+ F
Sbjct: 21  TVFEGKHQQFLVPNNVRLKFLRDRLHKSLKNF 52



 Score = 21.0 bits (42), Expect(2) = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 651 DYKKIYSFKTTQVQMSH 601
           +YKKI SF+ T  +  H
Sbjct: 11  EYKKIISFRDTVFEGKH 27


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 690 LYLGNFVFKIHKIDYKKIYSFKTTQVQMSHLPERT-FLVIMIYHLINSDK 544
           L L  ++F         +YSFK + V  SH   R+  L+   Y+ +N  K
Sbjct: 556 LALAEWLFSRRLFQSALLYSFKVSDVDDSHFSFRSQILICWCYYRLNDFK 605


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 551 ATKWRNPRSVFEHLATTTSI 492
           ATK R+PR V+  L TT++I
Sbjct: 50  ATKQRDPRLVYRSLRTTSNI 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,331
Number of Sequences: 5004
Number of extensions: 63237
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)