Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0322
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -2

Query: 212 KMALSKKNKKRAKLGHHLVKSK*RLIAIRNLKTKTNSRSKFRI 84
           K ALS+ N++R+++   L K++   +A RN+   T S++   +
Sbjct: 10  KSALSQLNRERSEMVKDLEKAQKDYVAARNMHKSTGSQNHLEV 52


>Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -2

Query: 212 KMALSKKNKKRAKLGHHLVKSK*RLIAIRNLKTKTNSRSKFRI 84
           K ALS+ N++R+++   L K++   +A RN+   T S++   +
Sbjct: 10  KSALSQLNRERSEMVKDLEKAQKDYVAARNMHKSTGSQNHLEV 52


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 651  DYKKIYSFKTTQVQMSHLPERTFLVIMIYHLINSDKMAEPA 529
            ++   +   T  V   H+PE+ FL I+   L+N   + +PA
Sbjct: 886  NFASTFMLFTVPVLKLHIPEKNFLEILYNRLVNDLALFQPA 926


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 639 IYSFKTTQVQMSHLPERTFLVIMIYHLINSD-KMAEPAFSI*TPCNDYEHLIKTIFK 472
           I+SF+ T  ++ H+  + F  +  Y LIN D +++        P N  E +++ +F+
Sbjct: 17  IHSFQITTTKVEHMKPKRFTTVHQYSLINWDIEISVSQILQEHPQNPEEPVVEKVFR 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,141
Number of Sequences: 27780
Number of extensions: 349856
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)