Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0320
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9ZDW0 Cluster: MITOCHONDRIAL TRANSPORTER ATM1; n=17; P...    33   8.9  
UniRef50_A0UXA5 Cluster: Phage integrase; n=1; Clostridium cellu...    33   8.9  

>UniRef50_Q9ZDW0 Cluster: MITOCHONDRIAL TRANSPORTER ATM1; n=17;
           Proteobacteria|Rep: MITOCHONDRIAL TRANSPORTER ATM1 -
           Rickettsia prowazekii
          Length = 609

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = -1

Query: 184 LLIFMCYTIAISSYSFSFSG*LNKNKDTCCIRHEDNDLPFK*V-YF 50
           +++++CYT+ IS++  SF+  +N++ +T   R  D+ L F+ V YF
Sbjct: 187 MIVYVCYTLLISTWRISFAREMNQSDNTANNRAIDSLLNFETVKYF 232


>UniRef50_A0UXA5 Cluster: Phage integrase; n=1; Clostridium
           cellulolyticum H10|Rep: Phage integrase - Clostridium
           cellulolyticum H10
          Length = 517

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 263 GLTIHNVHAARSASSSIMLSGLC*GCPGFVAPRVCL 370
           G+ +H  H AR  S  I     C  CP FV+PRVC+
Sbjct: 433 GICMH--HPARRESCPISDGESCMHCPNFVSPRVCI 466


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,011,550
Number of Sequences: 1657284
Number of extensions: 13782143
Number of successful extensions: 28246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28244
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)