Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0320
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    25   0.79 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   1.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.5  

>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 403 WSHESNPYEPLQTYPRRYETGAASTQ 326
           W   S  Y+P   Y +RYE   A+++
Sbjct: 100 WERLSKKYDPQGQYKKRYEEHVATSR 125


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 280 RACSTIRVQFNNAFRAVLRLPRFRSASGMFAVARTDCF 393
           R    I+    + F+ +LRLP+F+    +  V+   C+
Sbjct: 198 RIPDVIKTSGPHKFQPLLRLPKFKKKPLLCVVSTLSCY 235


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 404 YASGAHPWYAECGLAP 451
           Y++  H WY +CG  P
Sbjct: 457 YSTVGH-WYLDCGFGP 471


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,582
Number of Sequences: 336
Number of extensions: 3775
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)