Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0320
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    27   2.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.0  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   7.9  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    25   7.9  

>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 VARTDCFHATIRKRCASLVRRVRASSNTVL 462
           + RTD F+  +R+ CA+  R ++  S T L
Sbjct: 100 ILRTDKFYLLMRRFCAAAFRDIQTRSKTAL 129


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 340  PRFRSASGMFAVARTDCFHATIRKRCASLVRRVRASSNT 456
            P FRS   +  VA  D  HA+  +R  S   R +ASS +
Sbjct: 906  PAFRSEEAVVEVADEDHPHASEAERAHSYSNRKQASSES 944


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 181  ATLNEKSTHWLLQNISV 231
            A   E+ THWL+QN SV
Sbjct: 2432 AKSRERFTHWLMQNASV 2448


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 311 LNWTRIVLHARCV*SAHRVLISFK*DF 231
           ++WTRI++H   V +   V+I FK  F
Sbjct: 210 ISWTRILVHILSVTACAMVVIGFKAKF 236


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 393 SCDHTQAVRILGTQSAG*LQHGPSHDCKQTGLPLYKTL 506
           S DH      LG    G L  GP ++C  +   + KTL
Sbjct: 73  SYDHNSDDTPLGKSKVGYLSPGPGYECDSSPALIDKTL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,151
Number of Sequences: 5004
Number of extensions: 60951
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)