Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0320
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    29   4.7  
11_04_0372 + 16915047-16915406,16915493-16916341                       28   8.2  
11_04_0369 - 16885918-16886080,16886235-16886671,16886767-168870...    28   8.2  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    28   8.2  

>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 373 VARTDCFHATIRKRCASLVRRVRASSNTVLAMIANRLDCP 492
           VAR + +   +R RC +   R  A  N +L      L CP
Sbjct: 341 VARFEAYRDAVRTRCRATAARAAADGNELLRFHPAALACP 380


>11_04_0372 + 16915047-16915406,16915493-16916341
          Length = 402

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 175 ISATLNEKSTHWLLQNISVKSHLKEINTL 261
           I ATL++   HW ++  S K  LKE+  L
Sbjct: 56  IHATLHDAEQHWNIREESTKLRLKELKDL 84


>11_04_0369 -
           16885918-16886080,16886235-16886671,16886767-16887028,
           16887050-16887353,16887771-16888166,16888531-16888579,
           16889303-16889737
          Length = 681

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 175 ISATLNEKSTHWLLQNISVKSHLKEINTLWAD 270
           I ATL++   HW+++  S K  L E+  L  D
Sbjct: 51  IHATLHDAEEHWIIREESAKVRLTELKELAYD 82


>11_04_0364 -
           16791774-16792490,16792545-16793561,16793856-16793920,
           16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 175 ISATLNEKSTHWLLQNISVKSHLKEINTLWAD 270
           I ATL +   HW +++ S K  LKE+  L  D
Sbjct: 58  IHATLKDAEQHWDIRDESAKLRLKELKELAYD 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,137,708
Number of Sequences: 37544
Number of extensions: 372568
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)