Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0320
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6)             31   0.68 
SB_52267| Best HMM Match : Peptidase_C42 (HMM E-Value=0.98)            31   1.2  
SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)               29   3.6  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        29   3.6  
SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)                      28   6.3  
SB_13186| Best HMM Match : Nsp1_C (HMM E-Value=6.8e-07)                28   6.3  
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    28   8.4  

>SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6)
          Length = 220

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 647 VEVFTIHRFKTMHRYYTSSILNKSMYIVHR-YTIPVTVRLMRDRCLLQQCLI 495
           ++V T + + + HR+Y S     S+ I+H  Y  P T RL+    + Q  LI
Sbjct: 9   IQVHTGYAYPSTHRHYLSKKTQASLIILHTGYAYPTTHRLLHLSKITQASLI 60


>SB_52267| Best HMM Match : Peptidase_C42 (HMM E-Value=0.98)
          Length = 180

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 382 TDCFHATIRKRCASLVRRVRASSNTVLAMIANRLDCPYIRHCCNKHLS 525
           + CF     +RC++ VR VR S +  +  I        IR C N H S
Sbjct: 53  SQCFKKLQCRRCSAHVRSVRISRHEAVIYIGGNPYFSNIRDCLNAHFS 100


>SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)
          Length = 704

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 459 DRVGASPHSAYQGCAPLAYGRMKAIRTSHCKHTRGATKPGQPQHSPESIIELDADRA 289
           +R+   P +  +G +PLA   +    T H       T PG    SP S+  L + R+
Sbjct: 111 ERLSCQPPTQSRGVSPLAPLSIITSSTPHLDFAATQTSPGLGLASPHSVTRLSSPRS 167


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 459  DRVGASPHSAYQGCAPLAYGRMKAIRTSHCKHTRGATKPGQPQHSPESIIELDADRA 289
            +R+   P +  +G +PLA   +    T H       T PG    SP S+  L + R+
Sbjct: 1331 ERLSCQPPTQSRGVSPLAPLSIITSSTPHLDFAATQTSPGLGLASPHSVTRLSSPRS 1387


>SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)
          Length = 467

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 263 GLTIHNVHAARSASSSIMLSGLC*GCPGFVAPRVCL 370
           GL+  +V A+ SAS+ + +SGL    PG  AP + L
Sbjct: 137 GLSFGSVAASTSASTGLSISGLSSTTPGTSAPGLTL 172


>SB_13186| Best HMM Match : Nsp1_C (HMM E-Value=6.8e-07)
          Length = 329

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 263 GLTIHNVHAARSASSSIMLSGLC*GCPGFVAPRVCL 370
           GL+  +V A+ SAS+ + +SGL    PG  AP + L
Sbjct: 137 GLSFGSVAASTSASTGLSISGLSSTTPGTSAPGLTL 172


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 430  RRVRASSNTVLAMIANRLDCPYIRHCCNKHL 522
            R +R +S T  A  A+ L CP + HC   HL
Sbjct: 1062 RPLRTTSLTPEATFAHYLTCPRLDHCALPHL 1092


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,131,336
Number of Sequences: 59808
Number of extensions: 471910
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)