Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0320
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    29   0.042
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 647 VEVFTIHRFKTMHRYYTSSILNKSMYIVHRYTIPVTVRLMRDRCLLQQCLI*GQSSL 477
           V+ F IH   T H +   ++LNK     H YT  V + ++     L  CL  G+  L
Sbjct: 169 VQPFLIHWIWTPHGWMRRNVLNKQHVHFHDYTGSVVIHVVGGLTGLIGCLTLGRRIL 225


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = -1

Query: 298 GSCCMHVVYSQPTEY*SPSNEILQKYSAATSVLTFH*ALLIFMCY 164
           G+CC+  ++S      +PSN  +   +    ++ F   +L+   +
Sbjct: 74  GNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSF 118


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = -1

Query: 298 GSCCMHVVYSQPTEY*SPSNEILQKYSAATSVLTFH*ALLIFMCY 164
           G+CC+  ++S      +PSN  +   +    ++ F   +L+   +
Sbjct: 74  GNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSF 118


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 594 RCIVTMHRLEPMYCKYFNIE 653
           RC VTMH     Y KY  +E
Sbjct: 104 RCTVTMHGTVQSYDKYDLLE 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,511
Number of Sequences: 438
Number of extensions: 4156
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)