Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0320
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    29   3.0  
At1g50120.1 68414.m05621 expressed protein                             29   3.0  
At4g11490.1 68417.m01847 protein kinase family protein contains ...    29   3.9  
At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger) fa...    27   9.0  

>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
           (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
           to mitochondrial sorting protein 1 (MSP1) protein
           (TAT-binding homolog 4) (Swiss-Prot:P28737)
           [Saccharomyces cerevisiae]
          Length = 1265

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +1

Query: 427 VRRVRASSNTVLAMIA-NRLDCPYIRHCCNKHLSLINLTVTGMV 555
           + +V+A+  ++LA++A N+LDCP +   C K  +L + +V  +V
Sbjct: 843 ILKVQANITSILAVLAKNKLDCPDLGTLCIKDQTLPSESVEKVV 886


>At1g50120.1 68414.m05621 expressed protein
          Length = 532

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +2

Query: 275 HNVHAARSASSSIMLSGLC*GCPGFVAPRVCLQWLVRIAFMRPYASGAHPWYAECGLAPT 454
           H+   A    +S + S    G   F  PRV +QW++R  F+    S     Y    L P 
Sbjct: 434 HHEVVADLIQTSFLFSIPTDGPMSFSTPRVSVQWILRFEFLTTPKSVDLSRYEHPLLVPE 493

Query: 455 RS*P*LQTDWTAPI 496
           R     +++W  PI
Sbjct: 494 RE----KSEWVLPI 503


>At4g11490.1 68417.m01847 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 636

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 220 NISVKSHLKEINTLWADYTQRACSTIRVQFN 312
           N+ +KS+L  +NT+W   T R  S     +N
Sbjct: 143 NVDIKSNLTYLNTIWEALTDRLMSDASSDYN 173


>At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 634

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -2

Query: 366 HTRGATKPGQPQHSPESIIELDADRAACTLCIVSPQ 259
           H  G     +  + PES ++ D  +  C +C+ +P+
Sbjct: 562 HRHGGASANRINNLPESTVQTDNFQETCVICLETPK 597


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,180
Number of Sequences: 28952
Number of extensions: 303635
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)