Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0319
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0418 - 17406313-17407419 35 0.032
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 30 0.91
09_04_0414 - 17393780-17394826 30 1.2
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098... 29 1.6
09_04_0413 + 17372852-17373787 29 2.1
04_03_0167 - 12178587-12179203,12179243-12179375,12179540-121797... 29 2.1
07_03_1467 - 26736859-26736868,26737769-26738439 29 2.8
07_01_0775 + 5976883-5978109 29 2.8
07_01_0447 - 3377666-3378673 29 2.8
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729 28 3.7
06_01_0782 - 5848381-5849394,5851143-5851255,5851337-5851440,585... 28 4.8
07_01_0449 - 3392512-3393504 27 6.4
01_06_0922 - 33022709-33023545 27 6.4
11_02_0018 - 7412309-7413328 27 8.5
08_02_0996 - 23404595-23405596 27 8.5
07_03_1465 - 26729872-26730909 27 8.5
04_04_0650 + 26950912-26951397,26951552-26951728 27 8.5
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214... 27 8.5
>09_04_0418 - 17406313-17407419
Length = 368
Score = 35.1 bits (77), Expect = 0.032
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Frame = +2
Query: 224 KLRFQPPKLIRQYK----ERVDASKEGPACPLPVPPTYYVDEDC-------LRINVYTPS 370
++ F P ++R YK ER D ++ P P P V +D + +Y P
Sbjct: 54 EIEFDMPGVLRMYKDGRVERFDGTQTVPPSPSGDPANGVVSKDVVLDPAAGISARLYLPP 113
Query: 371 N-NVSKPLPVIFYIHAGAFYSMTGRSDL 451
K LPV+ + H GAF T S L
Sbjct: 114 GVEPGKKLPVVLFFHGGAFLVHTAASPL 141
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 30.3 bits (65), Expect = 0.91
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -2
Query: 436 RHGVERSGVNVKYHRERLRDIVTRSIHVDSQAVFVDVVSGRDGQRAGRALFARVNAFFV 260
R GV R ++VK+H E L +V+ S ++ + +++SGR Q G + AF V
Sbjct: 404 RQGV-RKVLDVKFHPEGLPQLVSCSNEAPNELLLFNLLSGRATQLRGHNTKIQATAFAV 461
>09_04_0414 - 17393780-17394826
Length = 348
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 344 LRINVYTPSNNVSKPLPVIFYIHAGAF 424
+R +Y PS + +PV+ Y H GAF
Sbjct: 87 VRARLYLPSFRATAKVPVLLYFHGGAF 113
>05_03_0614 -
16206005-16206586,16207585-16207608,16209746-16209879,
16210703-16210832
Length = 289
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +3
Query: 303 LCPSLPLTTSTKTA*ESTCILLVTMSRSLSL*YFTFTP 416
LCPS PL+ + + ST LVT RS SL TF P
Sbjct: 142 LCPSTPLSPMSSVSCSSTASTLVT--RSCSLTSTTFAP 177
>09_04_0413 + 17372852-17373787
Length = 311
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 329 VDEDC-LRINVYTPSN-NVSKPLPVIFYIHAGAF 424
VD D L + V+ P+ + SK LPV+ + H GAF
Sbjct: 50 VDADTGLSVRVFLPARPDPSKKLPVLVFFHGGAF 83
>04_03_0167 -
12178587-12179203,12179243-12179375,12179540-12179726,
12179800-12179963,12180016-12180234
Length = 439
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -1
Query: 335 RRRSKWEGRAEGRPGPLCSRQRVLCIAELVLGAGIVVSRPVAQRILCPYRPGTAFRDV 162
R+R +A RP L SR R + A ++LG V +PV +R PGT ++V
Sbjct: 124 RQRGIKGHKAPSRPWTLTSRVRSVA-ARIILGT--TVRKPVRRRCTWATTPGTVHKEV 178
>07_03_1467 - 26736859-26736868,26737769-26738439
Length = 226
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 356 VYTPSNNV---SKPLPVIFYIHAGAFYSMTGRS 445
V++P+++ S PLPV+ Y H G F +T S
Sbjct: 87 VFSPASSSAVESPPLPVVVYFHGGGFALLTAAS 119
>07_01_0775 + 5976883-5978109
Length = 408
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 464 SEARPGRSCPSWSRTLRRECKISQGEASRHC 372
S+ R C S + T +R C+ S+ E RHC
Sbjct: 10 SDDEDERHCSSSTNTKKRACRESEEEDERHC 40
>07_01_0447 - 3377666-3378673
Length = 335
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 344 LRINVYTPSNNVSKP--LPVIFYIHAGAF 424
LR+ +Y P+N+ + LPV+ Y H G F
Sbjct: 63 LRLRMYAPANHGGEEGKLPVLVYFHGGGF 91
>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
Length = 559
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 125 SQSGSFLGSWMETRRGKQFQAYRGI--RYAEPP 217
S +GSF+ W RG+ A R I R+A+PP
Sbjct: 180 SSAGSFVWDWPSLARGEGIVAPRSIGRRFADPP 212
>06_01_0782 -
5848381-5849394,5851143-5851255,5851337-5851440,
5851584-5851660,5851740-5852132,5852267-5852482,
5852826-5852923,5853503-5853637,5853745-5853811,
5853999-5854094,5854555-5854683
Length = 813
Score = 27.9 bits (59), Expect = 4.8
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Frame = +2
Query: 206 AEPPVGKLRFQPPKLIRQYKE-RVDASKEGPACPLPVPP-TYYVDED----CLRINVYTP 367
A P ++ F + QYK RV P P P T V D R VY P
Sbjct: 494 AMDPDSEVAFDFQPYLCQYKSGRVFRLGGDPTVPAGTDPVTRVVSRDIHAGAARARVYLP 553
Query: 368 SNNV--SKPLPVIFYIHAGAFYSMTGRSDLAGPH-YLLD 475
++ LPV+ Y H G F +TG H YL D
Sbjct: 554 PGAAVSTEKLPVVVYFHGGGF--VTGSPARPSTHAYLND 590
>07_01_0449 - 3392512-3393504
Length = 330
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 344 LRINVYTPSNNVSKPLPVIFYIHAGAF 424
L + +Y P LPV FY H G F
Sbjct: 54 LGVRLYRPRERGGGRLPVFFYYHGGGF 80
>01_06_0922 - 33022709-33023545
Length = 278
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 200 RYAEPPVGKLRFQPPKLIRQYKERVDASKEGPACPLPVPP 319
R A P L+ +PP +R RV + P P P PP
Sbjct: 194 RRAASPAPSLQRKPPVPVRPSPRRVQEAPPSPLEPPPPPP 233
>11_02_0018 - 7412309-7413328
Length = 339
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 368 SNNVSKPLPVIFYIHAGAFYSMTGRS 445
+ + +KPLPV+ + H G F ++ S
Sbjct: 77 TGDATKPLPVVVFFHGGGFAYLSAAS 102
>08_02_0996 - 23404595-23405596
Length = 333
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 344 LRINVYTPSNNVSKPLPVIFYIHAGAF 424
L + +Y P + + LPV+ Y H GAF
Sbjct: 84 LAVRLYRPKHRGGR-LPVLIYFHGGAF 109
>07_03_1465 - 26729872-26730909
Length = 345
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 365 PSNNVSKPLPVIFYIHAGAFYSMTGRS 445
P+N + LPV+ Y H G F + S
Sbjct: 82 PTNTAAVKLPVVVYFHGGGFVLFSAAS 108
>04_04_0650 + 26950912-26951397,26951552-26951728
Length = 220
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 239 PPKLIRQYKERVDASKEGPACPLPVPP 319
PP+ Q +ER ++GPA PLPV P
Sbjct: 60 PPQEEEQRRER-KTRRQGPAQPLPVQP 85
>04_04_0352 +
24619621-24619757,24620102-24620411,24621022-24621429,
24621773-24622357
Length = 479
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 146 GSWMETRRGKQFQAYRGIRYAEPPVGKLRFQPPKLIRQYKERVDASK 286
G ++ + G YRG YA+PP PK+ K+ +D SK
Sbjct: 248 GIVLDIQEGNTIIMYRGKNYAQPPP---EIMSPKVTLPRKKALDKSK 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,963
Number of Sequences: 37544
Number of extensions: 345662
Number of successful extensions: 1110
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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