Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0319
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02580.1 68415.m00198 cytochrome P450 family protein 31 0.33
At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SD... 31 0.58
At2g03550.1 68415.m00315 expressed protein similar to PrMC3 [Pin... 30 0.76
At1g19190.1 68414.m02389 expressed protein contains similarity t... 30 0.76
At4g37160.1 68417.m05261 multi-copper oxidase type I family prot... 29 1.3
At2g24930.1 68415.m02981 Ulp1 protease family protein contains P... 29 1.3
At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SD... 29 1.3
At1g76590.1 68414.m08912 zinc-binding family protein similar to ... 29 2.3
At3g26300.1 68416.m03282 cytochrome P450 family protein contains... 27 5.4
At2g23630.1 68415.m02819 multi-copper oxidase type I family prot... 27 5.4
At2g17580.1 68415.m02034 polynucleotide adenylyltransferase fami... 27 5.4
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 27 5.4
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 5.4
At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putat... 27 5.4
At4g28910.2 68417.m04132 expressed protein 27 7.1
At4g28910.1 68417.m04131 expressed protein 27 7.1
At4g36195.1 68417.m05150 serine carboxypeptidase S28 family prot... 27 9.4
At3g26320.1 68416.m03284 cytochrome P450 71B36, putative (CYP71B... 27 9.4
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 27 9.4
>At2g02580.1 68415.m00198 cytochrome P450 family protein
Length = 500
Score = 31.5 bits (68), Expect = 0.33
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 17 LKLIFICAIVYYADAHKNNKRQTEQKPAEPDGPV 118
L L+F+C I+ A HK + +Q P+ P P+
Sbjct: 7 LSLLFLCCILLAAFKHKKRRTNQQQPPSPPGFPI 40
>At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SDR)
family protein similar to carbonyl reductase GI:1049108
from [Mus musculus]
Length = 296
Score = 30.7 bits (66), Expect = 0.58
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 269 RVDASKEGPACPLPVPPTYYVDEDCLRINVYTPSNNVSKPLPVI 400
R A KEG + TY + E+C++IN Y P +P++
Sbjct: 108 RAGAGKEGFKWDEIITETYELTEECIKINYYGPKRMCEAFIPLL 151
>At2g03550.1 68415.m00315 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873; contains an
esterase/lipase/thioesterase active site serine domain
(prosite: PS50187)
Length = 312
Score = 30.3 bits (65), Expect = 0.76
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 335 EDCLRINVYTPSNNVSKPLPVIFYIHAGAFYSMTGRS 445
E L + +Y P K LP++ Y H G F T S
Sbjct: 50 EKNLSLRIYLPEKVTVKKLPILIYFHGGGFIIETAFS 86
>At1g19190.1 68414.m02389 expressed protein contains similarity to
anther-specific and pathogenesis response protein
(PrMC3) GI:5487873 from [Pinus radiata]
Length = 318
Score = 30.3 bits (65), Expect = 0.76
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 326 YVDEDCLRINVYTPSNNV----SKPLPVIFYIHAGAFYSMTGRSDL 451
Y E L + +Y P N+V K +P++ Y H G F T S +
Sbjct: 47 YSPEKNLSLRIYLPQNSVYETGEKKIPLLVYFHGGGFIMETAFSPI 92
>At4g37160.1 68417.m05261 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase
Length = 541
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 218 VGKLRFQPPKLIRQYKERVDASKEGPACPLPVPPTYYV 331
V RF P L R SK PLP+ PTY++
Sbjct: 279 VASTRFTKPVLTTTASLRYQGSKNAAYGPLPIGPTYHI 316
>At2g24930.1 68415.m02981 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 926
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 71 NKRQTEQKPAEPDGPVTRSQSG-SFLGSWMETRRGKQFQAYRGIRYAEPPVGKLRFQPPK 247
N+R +KP P+ P + + + L TRRG+ + + P K+R PK
Sbjct: 516 NRRLRSRKPPSPNVPKHKKEKTLNELIQKPPTRRGRGRKPLEQPKKVPPTALKIRINKPK 575
Query: 248 LIRQYKERVDASKE 289
+ K + + +KE
Sbjct: 576 PSEETKSKAEEAKE 589
>At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 296
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 269 RVDASKEGPACPLPVPPTYYVDEDCLRINVYTPSNNVSKPLPVI 400
R KEG + TY + E+C++IN Y P +P++
Sbjct: 108 RAGTGKEGFKWEETITETYELAEECIKINYYGPKRMCEAFIPLL 151
>At1g76590.1 68414.m08912 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 245
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 204 YLMPL*AWNCFPRRVSIHEPKNEPDCERVTGPSGSAGFCSVCLL 73
+L+P+ N F SIH N+ +C S FCS CLL
Sbjct: 20 WLIPMLRANYFIP-CSIHAASNKSECNMFCLDCSSEAFCSYCLL 62
>At3g26300.1 68416.m03282 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 500
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 14 LLKLIFICAIVYYADAHKNNKRQTEQKPAEPDGPV 118
LL LIF+ I+ HKN + P+ P P+
Sbjct: 6 LLSLIFVICILVAVFNHKNRRNYQRTPPSPPGCPI 40
>At2g23630.1 68415.m02819 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase
Length = 541
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 218 VGKLRFQPPKLIRQYKERVDASKEGPACPLPVPPTYYV 331
V RF P L SK P+ PLP+ PTY++
Sbjct: 277 VASTRFTKPILTTTGILSYQGSKIRPSHPLPIGPTYHI 314
>At2g17580.1 68415.m02034 polynucleotide adenylyltransferase family
protein similar to SP|P13685 Poly(A) polymerase (EC
2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 757
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 56 DAHKNNKRQTEQKPAEPDGPVTRSQSGSFLGSWMETRRGKQ 178
D+ +NN ++TE P P GP ++Q S + ++ RR K+
Sbjct: 593 DSEQNNDQETEVCPRTPSGP-AKNQDQSVV-QMLKRRRSKE 631
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 154 DGDTSRKAVPGL*GHKIR*ATGRETTIPAPKTNSAIQRTR*REQRGPGLPS 306
D +T+ A L ++I GR+ + + + +TR + Q GPGLPS
Sbjct: 59 DEETALSARRNLQSYEIN---GRQLRVDFAENDKGTDKTRDQSQGGPGLPS 106
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 302 PLPVPPTYY-VDEDCLRINVYTPSNNVSKPLPVIFY 406
P P PPTYY V VY P S P P ++Y
Sbjct: 619 PPPPPPTYYAVQSPPPPPPVYYPPVTASPPPPPVYY 654
>At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 599
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 296 ACPLPVPPTYYVDEDCLRINV---YTPSNNVSKPLPV 397
A PLP PP + +D + + + + PS+N P+P+
Sbjct: 18 ALPLPHPPRIPIADDSITLQIDSSFRPSSNPMPPVPL 54
>At4g28910.2 68417.m04132 expressed protein
Length = 425
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 56 DAHKNNKRQTEQKPAEPDGPVTRSQSG 136
D KN T Q+PAEP RS SG
Sbjct: 50 DDFKNFLHPTSQRPAEPSSGSQRSDSG 76
>At4g28910.1 68417.m04131 expressed protein
Length = 425
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 56 DAHKNNKRQTEQKPAEPDGPVTRSQSG 136
D KN T Q+PAEP RS SG
Sbjct: 50 DDFKNFLHPTSQRPAEPSSGSQRSDSG 76
>At4g36195.1 68417.m05150 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 488
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = -2
Query: 451 QVAPARHGVERSGVNVKYHRERLRDIVTRSIHVDSQAVFVDVVSGRDGQRAGRALF 284
QVAPA + +N +YH + + + + ++ + A ++ G D A + +F
Sbjct: 350 QVAPANDSIRSHQINTEYHLDLCKSLFGKGVYPEVDA--TNLYYGSDRIAATKIIF 403
>At3g26320.1 68416.m03284 cytochrome P450 71B36, putative (CYP71B36)
identical to Cytochrome P450 71B36 (SP:Q9LIP4)
[Arabidopsis thaliana]; contains Pfam profile: PF00067
cytochrome P450
Length = 500
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 11 MLLKLIFICAIVYYADAHKNNKRQTEQKPAEPDG 112
+ L L+F+ I+ A HK ++Q ++KP P G
Sbjct: 5 LFLSLLFLSCILLAAFTHK-KRQQHQRKPPSPPG 37
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = -2
Query: 394 RERLRDIVTRSIHVDSQAVFVDVVS-----GRDGQRAGRALFARVNAFF 263
+ + D++ R +VDSQ + ++ G++G+RA L+A + A+F
Sbjct: 1027 KSNIEDVLERVANVDSQFMAWLTLNRRNAVGKNGKRARECLYAEIPAYF 1075
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,506,337
Number of Sequences: 28952
Number of extensions: 256807
Number of successful extensions: 711
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -