Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0318
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    25   0.49 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.0  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   8.0  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 621 SVPXHVGGLRLPQAGQILDIV 559
           S+P  VGG  +P    +LDI+
Sbjct: 177 SIPGEVGGYDIPAMSNVLDII 197


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 509 TSGAATSRTKPANWSLSLYTSSTVRVPR 426
           TS ++T+  KP +  L++    T+ +PR
Sbjct: 431 TSTSSTNSNKPNSSDLNMLIKETMPLPR 458


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 566 SSIWPAWGSRRP 601
           ++IWP W S+ P
Sbjct: 568 AAIWPLWCSQNP 579


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 163 TIVGGWAWAWCLVTDVQRIS 222
           T+VGG  +A+CL+  ++ ++
Sbjct: 80  TLVGGPEYAYCLLPPLESLA 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,345
Number of Sequences: 336
Number of extensions: 4324
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)