Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0318
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 34 0.025
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 29 0.71
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 27 2.9
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 3.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 5.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 5.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 5.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 5.0
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 26 5.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 5.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 5.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 5.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 5.0
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 25 8.7
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 33.9 bits (74), Expect = 0.025
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 365 LPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITSRDI 216
L R S + SSSS H + P T S +P + ST S G +VIT+ D+
Sbjct: 48 LYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDV 97
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 29.1 bits (62), Expect = 0.71
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 300 RPVQDHERRRTSHNCLRAVPGQDRQRD-*DDCPANVGGSFASYSRN 434
+PV +H+ ++TS VPG R +D DCP++ F S N
Sbjct: 218 QPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHLASSN 263
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 435 SSENSSQMTLQRLQDSHLNLFDG 367
S++NSS + Q + DS++N+F G
Sbjct: 137 SNQNSSLKSFQSVPDSNVNVFGG 159
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 233 ITSRDIRWTSVTRHQAHAHPPTMVRFVVGPKQPPETISASLGPTV 99
+T ++ WTS T H A R+++ + P E IS ++G TV
Sbjct: 299 LTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFE-ISHNVGRTV 342
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 490 EVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVXRDADVGVT 636
E + D + +L TI+DV+D ++++ + V R ++G T
Sbjct: 464 ETVSQDTSLTSVTVLPRTIRDVFDRIRFVLNGLTDNNVEVSRHNNIGRT 512
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 95 MLPILNPFTVTFTIHTLHFTTKTITNLFNLP 3
+L + NP + + +H TT I NLFN+P
Sbjct: 734 LLNLENPISGSQGLHYKRLTTDMIHNLFNVP 764
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 482 KPANWSLSLYTSSTVRVPRIARK*PSNVCRTV--ILISLTVLPRNCSQAVV 336
+P + L L+TS T P++ N+CR++ I S + PR+ S V+
Sbjct: 159 QPDDVMLVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVVM 209
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 589 KSQTANVXRDADVGVTLANRNAGIXEAECEKNXMDVKY 702
KS++ +V DV L N N I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 548 LIVKDRISIPILPTS 504
LIV DR+ +PILPT+
Sbjct: 37 LIVIDRVELPILPTT 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,675
Number of Sequences: 5004
Number of extensions: 69612
Number of successful extensions: 220
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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