Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0318
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121 41 0.001
10_08_0404 + 17653942-17654877,17656616-17657137 36 0.026
03_06_0433 + 33884858-33884926,33885027-33885263 32 0.56
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710... 31 0.74
12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252... 31 1.3
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 31 1.3
10_07_0138 + 13325418-13325954 31 1.3
10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594 30 2.3
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 29 3.0
10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601 29 3.9
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 5.2
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 29 5.2
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 29 5.2
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 28 6.9
11_06_0513 + 24466131-24469487 28 6.9
02_01_0091 + 646299-649082 28 6.9
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251 28 9.1
>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
Length = 499
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 379 IKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVY 558
+K V +EG R + ++T+EE+++ +F V + D+ + G+ I + +K +
Sbjct: 116 VKQLVKGVIEGETRVLAASMTMEEIFQGTKKFKQEVFDQVQLDLNKFGLYIYNANVKQLV 175
Query: 559 DDV--QYLASLGKSQTANVXRDADVGV 633
D+ +Y + LGK A V V
Sbjct: 176 DEPGHEYFSYLGKKTQQEAANKAKVDV 202
>10_08_0404 + 17653942-17654877,17656616-17657137
Length = 485
Score = 36.3 bits (80), Expect = 0.026
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +1
Query: 364 KTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFT 543
K + V +EG R + ++T+EE+++ F V E ++ + G+ I +
Sbjct: 92 KLSHHVNELVKGVIEGETRVLAASMTMEEIFQGTKSFKQAVFENVQLELNQFGLIIYNAN 151
Query: 544 IKDVYDDV--QYLASLGKSQTANVXRDADVGVTLANRNAGIXEAE 672
+K + D +Y + LG+ A V V A + E
Sbjct: 152 VKQLVDVAGHEYFSYLGQKTQQEAVNQAKVDVAEARMKGEVGAKE 196
>03_06_0433 + 33884858-33884926,33885027-33885263
Length = 101
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 296 PVTVSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPP 171
P VSGT V T F+ +TS +RWT T+H + P
Sbjct: 24 PKWVSGTTRRVYTQFVADFDQLTSNRVRWTPYTQHDDNDRAP 65
>10_03_0016 -
7099862-7099967,7100059-7100357,7101862-7102171,
7104402-7105054,7105266-7105554,7106549-7106634
Length = 580
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 287 VSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPP 171
VSGT V T F+ + +RWTS T+H + H P
Sbjct: 450 VSGTTRRVYTQFVADFDQLMPDRVRWTSYTQHDVNDHAP 488
>12_02_1071 +
25824311-25824460,25824774-25824857,25825168-25825246,
25825334-25825428,25825940-25826067,25826160-25826393,
25826509-25826683,25826716-25826748,25827292-25827375,
25827929-25828169,25828275-25828453,25828800-25828873,
25830800-25830950,25831178-25831252,25831748-25831778,
25832107-25832339
Length = 681
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Frame = +1
Query: 310 KIMNEDELLTTACEQFLGKTVKEIKMTVLQTLE-GHL-RAILGTLTV-EEVYKDRDQFAG 480
+IM +D+ L T F KE+ + L L G + A+ G V +++Y D+ Q
Sbjct: 406 QIMTKDDPLPTGPNNF-----KEVHVDFLPELSTGFVDSAVSGAAVVPDDIYLDKSQKFT 460
Query: 481 LVREVAAPDVGRMGIEIL-SFTIKDVYDDVQ 570
L ++ +GR+G + + + ++ +++ DVQ
Sbjct: 461 LFKDFTVSGLGRLGCDFVENVSLLEIWKDVQ 491
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 187 AWCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVA 303
AW L V R S+ M +NP + V+ G+PL + V+
Sbjct: 438 AWLLCDKVARKSVTCMNINPCYDIVDMCYGMPLALIRVS 476
>10_07_0138 + 13325418-13325954
Length = 178
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 446 KRCTKTGTNSRAWYAKWLRRTSEEWESRFCPSRLRTSTTMSSIWPAWGSR 595
+RC++ SR W ++ RR W R C R R T G R
Sbjct: 85 RRCSRRWRRSRRWRSRCSRRWRRSWRRRRCSRRWRRLWTSGDAHGGDGGR 134
>10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594
Length = 320
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = +1
Query: 346 CEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGI 525
C++ ++ + V +EG R + ++T+EE+++ +F V + + +G+
Sbjct: 97 CDEEAIRSPNHVIDLVKGVIEGETRVLASSMTMEEIFQGTKKFKQQVFDQVQLALNELGL 156
Query: 526 EILSFTIKD 552
I S ++D
Sbjct: 157 YIYSANVQD 165
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +1
Query: 34 VVKCSVCIVKVTVKGFKMGNIHTVGPNEAL--IVSGGCFGPTTKRTIVGGWAWAW 192
VV + +V K + GN TV P + SG GP+ R + W W +
Sbjct: 161 VVMITAYLVSFVPKKYNKGNSITVSPRSQVSRTSSGAASGPSESRDLGQVWGWGY 215
>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
Length = 371
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 702 IFDVHXVFFTFRFXNTSISVSQSYTNVSVPXHVGGLRLPQAG 577
++DV VFF+ RF ++ VS + S P H +L G
Sbjct: 184 VYDVFWVFFSERFFGANVMVSVATQKASNPVHTVANKLSLPG 225
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 146 PKQPPETISASLGPTVWMLPILNPFTVTF 60
PK P T + L P VW L + NP+ +F
Sbjct: 442 PKDNPYTDDSDLEPEVWALGLRNPWRCSF 470
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 441 SRRGVQRQGPIRG--LGTRSGCAGRRKNGNRDSVLHD*G 551
++ G + +GP+ G LGT C G +NG+ D V +D G
Sbjct: 29 AKGGRKTKGPVIGIDLGTTYSCVGVYRNGHVDIVANDQG 67
>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +1
Query: 34 VVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQ 213
V+ C C+V V + N + P + LI G P+ K +VGG VTDV
Sbjct: 1167 VIYCLRCLVDVDIPL----NQGCLAPVKILIPKGSFLSPSDKAAVVGGNVLTSQRVTDVV 1222
Query: 214 RISLEVMTLNPMC 252
++ + + C
Sbjct: 1223 LMAFQACACSQGC 1235
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 22 VIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEAL 123
V++ +KC C+ K+ + F GN+ + N +L
Sbjct: 255 VVIDFIKCFPCVEKLYIVAFNQGNLKNIRRNVSL 288
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -1
Query: 534 QNLDSHSSDVRRSHFAYQARE--LVPVFVHLFYCKSSENSSQMTLQRLQDSHLNLFDGLA 361
Q LDS+S+ RRS F ++ R L+ + + + S SS + ++L L L +A
Sbjct: 79 QALDSYSASARRSPFMHRVRSVALMGMAAYGVFAFLSARSSSLLQEKLLPQPLELRPKIA 138
Query: 360 QEL 352
++L
Sbjct: 139 RKL 141
>02_01_0091 + 646299-649082
Length = 927
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 346 CEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGI 525
CEQ L +T + +K T + + G + + + D F G++R VAA + +GI
Sbjct: 437 CEQVLMQTRQILKETAAELVNSICVYRGGYVASDRRKIEADLFGGILRGVAATNALELGI 496
Query: 526 EI 531
++
Sbjct: 497 DV 498
>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
Length = 148
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 511 GRMGIEILSFTIKDVYDDVQYLASLGKSQTANVXRDADVGVTL 639
G MG I F+IKD+Y+D + + S ++ D ++ V L
Sbjct: 10 GMMGPIIKVFSIKDIYEDAKSIISPSSYSDSDSNSDDEMEVVL 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,232,729
Number of Sequences: 37544
Number of extensions: 520826
Number of successful extensions: 1676
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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