Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0318
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           27   0.62 
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    25   2.5  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   5.8  
AY341186-1|AAR13750.1|  189|Anopheles gambiae GNBP A1 protein.         24   5.8  
AY341185-1|AAR13749.1|  189|Anopheles gambiae GNBP A1 protein.         24   5.8  
AY341183-1|AAR13747.1|  189|Anopheles gambiae GNBP A1 protein.         24   5.8  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   5.8  
AY341187-1|AAR13751.1|  189|Anopheles gambiae GNBP A1 protein.         23   7.6  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   7.6  

>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 24/91 (26%), Positives = 34/91 (37%)
 Frame = -2

Query: 299 TPVTVSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPPTMVRFVVGPKQPPETIS 120
           T  T +  P   +T+S +     T+    W   T       PPT   +   P  PP T +
Sbjct: 193 TATTTTHAPTTTTTWSDLPPPPPTTTTTVWIDPTATTTTHVPPTTTTWSDLPPPPPTTTT 252

Query: 119 ASLGPTVWMLPILNPFTVTFTIHTLHFTTKT 27
                TVW     +P T T T +T  +   T
Sbjct: 253 T----TVW----TDPTTTTTTDYTTAYPPTT 275


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 22  VIVLVVKCSVCIVKVTVKGFKMG 90
           V+++   CS+C  + TVK +  G
Sbjct: 135 VLIVAAGCSICAAQTTVKRYPTG 157


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 146  PKQPPETISASLGPTVWMLPILNPFTVT 63
            P QPPET++ +    + + P + P T T
Sbjct: 1471 PVQPPETLTPAGSVAITVEPSVPPATTT 1498


>AY341186-1|AAR13750.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 179 HPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPFTVTF 60
           H  T  +  V PK    T + ++ PT    P   P   TF
Sbjct: 112 HTVTRTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTF 151


>AY341185-1|AAR13749.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 179 HPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPFTVTF 60
           H  T  +  V PK    T + ++ PT    P   P   TF
Sbjct: 112 HTVTRTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTF 151


>AY341183-1|AAR13747.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 179 HPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPFTVTF 60
           H  T  +  V PK    T + ++ PT    P   P   TF
Sbjct: 112 HTVTRTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTF 151


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 512 PTSGAATSRTKPANWSLSLYTSSTVRVPRIAR 417
           P +   +  T+P +W  S  TS   R+PR  R
Sbjct: 274 PPARRRSRSTRPTSWPRSRPTSKPKRLPRRRR 305


>AY341187-1|AAR13751.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 179 HPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPFTVTF 60
           H  T  +  V PK    T + ++ PT    P   P   TF
Sbjct: 112 HTITRTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTF 151


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
            protein.
          Length = 1253

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 357  PGQDRQRD*DDCPANVGGSFASYSRNSYSRRGVQRQGPIRGLG 485
            PGQ            +GG  A+  R+S +  G  RQ    GLG
Sbjct: 1154 PGQQPSPGSRSYNGQMGGGGANRKRSSATNNGGGRQSSNNGLG 1196


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 840,296
Number of Sequences: 2352
Number of extensions: 20261
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)