Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0318
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 33 0.16
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 33 0.16
U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical pr... 32 0.50
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 32 0.50
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 32 0.50
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 32 0.50
U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory ... 31 0.87
U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory ... 31 0.87
U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory ... 31 0.87
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 31 0.87
U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein. 31 0.87
U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein. 31 0.87
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 4.7
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 29 4.7
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 29 4.7
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 4.7
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 4.7
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 29 4.7
Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical ... 28 6.2
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 28 6.2
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL032659-1|CAA21750.1| 298|Caenorhabditis elegans Hypothetical ... 28 8.1
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 415 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 594
LR +LGT T+ E+ +RD A + +V G+++ IKD+ Q + S+
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAK 290
Query: 595 QTA 603
A
Sbjct: 291 AEA 293
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 415 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 594
LR +LGT T+ E+ +RD A + +V G+++ IKD+ Q + S+
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAK 290
Query: 595 QTA 603
A
Sbjct: 291 AEA 293
>U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical
protein F47B7.2b protein.
Length = 678
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = -1
Query: 654 SISVSQSYTNVSVPXHVGGLRLPQAGQILDIVVDVL-NREGQNLDSHSS--DVRRSHFAY 484
++S Q + N H G + +A + V+D R +++D + D RSH+ +
Sbjct: 570 TLSAGQRHLNPKFQVHAGKVDQLEANDKVKNVLDASPQRTWKDIDGYDGLPDSGRSHYYF 629
Query: 483 QARELVPVFVHLFYCKSSENSSQ 415
L+ V + + YCK +N S+
Sbjct: 630 IFLSLIGVALIVIYCKYRKNRSK 652
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 500 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSS 324
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 700 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 759
Query: 323 SFMILHWATPVTVSGTPWAVS 261
S + H ATP T +G P A +
Sbjct: 760 SNIQNHRATPST-AGAPMAAT 779
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 500 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSS 324
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 468 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 527
Query: 323 SFMILHWATPVTVSGTPWAVS 261
S + H ATP T +G P A +
Sbjct: 528 SNIQNHRATPST-AGAPMAAT 547
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 500 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSS 324
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 700 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 759
Query: 323 SFMILHWATPVTVSGTPWAVS 261
S + H ATP T +G P A +
Sbjct: 760 SNIQNHRATPST-AGAPMAAT 779
>U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform c protein.
Length = 317
Score = 31.1 bits (67), Expect = 0.87
Identities = 45/211 (21%), Positives = 87/211 (41%)
Frame = +1
Query: 10 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 189
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 49 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 97
Query: 190 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 369
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 98 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 154
Query: 370 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 549
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 155 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 207
Query: 550 DVYDDVQYLASLGKSQTANVXRDADVGVTLA 642
DV VQ ++ + A R+A V +A
Sbjct: 208 DVRLPVQLQRAM--AAEAEAAREARAKVIVA 236
>U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform b protein.
Length = 392
Score = 31.1 bits (67), Expect = 0.87
Identities = 45/211 (21%), Positives = 87/211 (41%)
Frame = +1
Query: 10 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 189
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 190 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 369
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 370 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 549
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 550 DVYDDVQYLASLGKSQTANVXRDADVGVTLA 642
DV VQ ++ + A R+A V +A
Sbjct: 283 DVRLPVQLQRAM--AAEAEAAREARAKVIVA 311
>U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform a protein.
Length = 481
Score = 31.1 bits (67), Expect = 0.87
Identities = 45/211 (21%), Positives = 87/211 (41%)
Frame = +1
Query: 10 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 189
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 190 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 369
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 370 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 549
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 550 DVYDDVQYLASLGKSQTANVXRDADVGVTLA 642
DV VQ ++ + A R+A V +A
Sbjct: 283 DVRLPVQLQRAM--AAEAEAAREARAKVIVA 311
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +1
Query: 415 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 594
LR +LGT ++ E+ DR+ A ++ + GI++ IKDV +Q ++ +
Sbjct: 190 LRNMLGTRSLSEILSDRETLAASMQTILDEATESWGIKVERVEIKDVRLPIQLQRAM--A 247
Query: 595 QTANVXRDADVGVTLA 642
A R+A V A
Sbjct: 248 AEAEATREARAKVIAA 263
>U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 31.1 bits (67), Expect = 0.87
Identities = 45/211 (21%), Positives = 87/211 (41%)
Frame = +1
Query: 10 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 189
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 190 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 369
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 370 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 549
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 550 DVYDDVQYLASLGKSQTANVXRDADVGVTLA 642
DV VQ ++ + A R+A V +A
Sbjct: 283 DVRLPVQLQRAM--AAEAEAAREARAKVIVA 311
>U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 31.1 bits (67), Expect = 0.87
Identities = 45/211 (21%), Positives = 87/211 (41%)
Frame = +1
Query: 10 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 189
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 190 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 369
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 370 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 549
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 550 DVYDDVQYLASLGKSQTANVXRDADVGVTLA 642
DV VQ ++ + A R+A V +A
Sbjct: 283 DVRLPVQLQRAM--AAEAEAAREARAKVIVA 311
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 280 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 435
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 280 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 435
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 28.7 bits (61), Expect = 4.7
Identities = 32/142 (22%), Positives = 59/142 (41%)
Frame = +1
Query: 217 ISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVL 396
I L V + N + + + V ++V V K+ + +T+ +G K+
Sbjct: 103 IDLRVASYNVPSQEILSRDSVTVSVDAVVYFKVFDP---ITSVVG--VGNATDSTKLLAQ 157
Query: 397 QTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYL 576
TL R ILGT T+ E+ DR++ + ++ GI++ ++DV Q
Sbjct: 158 TTL----RTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDVRLPSQMQ 213
Query: 577 ASLGKSQTANVXRDADVGVTLA 642
++ + A RDA + A
Sbjct: 214 RAM--AAEAEATRDAGAKIIAA 233
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.7
Identities = 32/142 (22%), Positives = 59/142 (41%)
Frame = +1
Query: 217 ISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVL 396
I L V + N + + + V ++V V K+ + +T+ +G K+
Sbjct: 103 IDLRVASYNVPSQEILSRDSVTVSVDAVVYFKVFDP---ITSVVG--VGNATDSTKLLAQ 157
Query: 397 QTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYL 576
TL R ILGT T+ E+ DR++ + ++ GI++ ++DV Q
Sbjct: 158 TTL----RTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDVRLPSQMQ 213
Query: 577 ASLGKSQTANVXRDADVGVTLA 642
++ + A RDA + A
Sbjct: 214 RAM--AAEAEATRDAGAKIIAA 233
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 280 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 435
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 280 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 435
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 28.7 bits (61), Expect = 4.7
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +1
Query: 76 GFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCE 255
GF++G++H+ P + + + F T + I+ + L D+ + L V P C
Sbjct: 361 GFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGL--DIPHVDLVVNHNVPQCP 418
Query: 256 --YVE-TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTV 393
Y+ + G A + D L A EQ +GK + E+K+ +
Sbjct: 419 KTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVKI 467
>Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical
protein K06B4.10 protein.
Length = 405
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 105 DSVDVAHFESFYSDFHDTHTALHN 34
D +D+AH ESF+++ H T T N
Sbjct: 230 DYIDLAHSESFFTNDHQTFTERDN 253
>AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical
protein Y57A10C.3 protein.
Length = 364
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 347 QAVVRSSSSFMILHWATPVTVSGTPWAVS-TYSHIGFNVITSRDIRWTSVTRH 192
Q + + S + H T +T++GT W VS S I F ++ ++RW + H
Sbjct: 178 QIIAITCSCLALFHKFTIITINGT-WIVSCACSSIVFFLVERINLRWKAEMEH 229
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 28.3 bits (60), Expect = 6.2
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Frame = +1
Query: 76 GFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCE 255
GF++G++H+ P + + + F T + I+ + L D+ + L V P C
Sbjct: 361 GFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGL--DIPHVDLVVNHNVPQCP 418
Query: 256 --YVE-TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMT 390
Y+ + G A + D L A EQ +GK + E+K++
Sbjct: 419 KTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVS 466
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 354 VPGQDRQRD*DDCPANVGGSFASYSRNSYSRRGVQRQGPIRGLGTRSGCA 503
V G +Q CP+ +F+ S+N Y G G G +GCA
Sbjct: 1419 VNGTPKQCTASPCPSGYKCTFSKKSKNYYCCSSKASPGSSSGSGAANGCA 1468
>AL032659-1|CAA21750.1| 298|Caenorhabditis elegans Hypothetical
protein Y71H9A.2 protein.
Length = 298
Score = 27.9 bits (59), Expect = 8.1
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 415 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 594
LR ILGT T+ E+ DRD + ++ G+++ +KDV + Y +
Sbjct: 152 LRNILGTKTLTEMLSDRDVISLQMQATLDETTIPWGVKVERVEMKDV--RLPYQLQRVMA 209
Query: 595 QTANVXRDADVGVTLA--NRNAGIXEAE 672
A RDA + A +NA AE
Sbjct: 210 AEAEATRDAMAKIIAAEGEKNASTALAE 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,812
Number of Sequences: 27780
Number of extensions: 416008
Number of successful extensions: 1216
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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