Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0318
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64870.1 68418.m08160 expressed protein 38 0.005
At5g25250.1 68418.m02993 expressed protein 37 0.016
At5g25260.1 68418.m02994 expressed protein 36 0.022
At5g54100.1 68418.m06736 band 7 family protein similar to stomat... 32 0.35
At4g27585.1 68417.m03962 band 7 family protein similar to stomat... 31 0.82
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 30 1.4
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 29 3.3
At2g38570.1 68415.m04738 expressed protein ; expression supporte... 28 5.8
At2g17120.1 68415.m01976 peptidoglycan-binding LysM domain-conta... 28 5.8
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei... 28 7.6
At4g33870.1 68417.m04806 peroxidase, putative similar to peroxid... 28 7.6
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 28 7.6
At1g30360.1 68414.m03712 early-responsive to dehydration stress ... 28 7.6
>At5g64870.1 68418.m08160 expressed protein
Length = 479
Score = 38.3 bits (85), Expect = 0.005
Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 7/194 (3%)
Frame = +1
Query: 112 NEALIVSGGCFGPTTKRTIVGGWAWAW--CLVTDVQRISLEVMTLNPMCEYVETAQGVPL 285
++ L ++GG G T + W + W C V DV ++ + M +++ +P
Sbjct: 9 SQYLAITGG--GITDIKLAKKSWVFPWQSCTVFDVSPVNY-TFEVQAM-----SSEKLPF 60
Query: 286 TVTGVAQCKIMNEDE---LLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVY 456
+ V +D LL K + V +EG R ++ ++T+EEV+
Sbjct: 61 VIPAVFTIGPRVDDPHALLLYAMLMSQHDKHSNHVNELVQGVIEGETRVLVASMTMEEVF 120
Query: 457 KDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYD--DVQYLASLGKSQTANVXRDADVG 630
K +F V + ++ + G+ I + +K + D +Y + LG+ A +
Sbjct: 121 KGTKEFKKEVFDKVQLELNQFGLVIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKID 180
Query: 631 VTLANRNAGIXEAE 672
V A + E
Sbjct: 181 VAEAKMKGEVGAKE 194
>At5g25250.1 68418.m02993 expressed protein
Length = 470
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +1
Query: 403 LEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYD--DVQYL 576
+EG R + ++T+EE++K +F V + ++ + G+ I + +K + D +Y
Sbjct: 102 IEGETRVLAASMTMEEIFKGTKEFKKEVFDKVQLELNQFGLVIYNANVKQLVDVPGHEYF 161
Query: 577 ASLGKSQTANVXRDADVGVTLANRNAGIXEAE 672
+ LG+ A + V+ A I E
Sbjct: 162 SYLGQKTQMEAANQARIDVSEAKMKGEIGAKE 193
>At5g25260.1 68418.m02994 expressed protein
Length = 463
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Frame = +1
Query: 364 KTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFT 543
K + V +EG R + ++T+EE++K +F V + ++ + G+ I +
Sbjct: 89 KQSNHVNELVEGVIEGETRVLAASMTMEEIFKGTKEFKKEVFDKVQLELDQFGLVIYNAN 148
Query: 544 IKDVYD--DVQYLASLGKSQTANVXRDADVGVTLANRNAGIXEAE 672
+K + D +Y + LG+ A + V A I E
Sbjct: 149 VKQLVDVPGHEYFSYLGQKTQMEAANQARIDVAEAKMKGEIGAKE 193
>At5g54100.1 68418.m06736 band 7 family protein similar to
stomatin-like protein [Zea mays] GI:7716464; contains
Pfam profile PF01145: SPFH domain / Band 7 family
Length = 401
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/98 (20%), Positives = 45/98 (45%)
Frame = +1
Query: 391 VLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQ 570
V+Q + +R+ LG +T+++ +++RD + E G++ L + I+D+
Sbjct: 194 VMQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDIMPPNG 253
Query: 571 YLASLGKSQTANVXRDADVGVTLANRNAGIXEAECEKN 684
++ A + A + + R A I A+ +K+
Sbjct: 254 VRVAMEMQAEAERKKRAQILESEGERQAHINRADGKKS 291
>At4g27585.1 68417.m03962 band 7 family protein similar to
stomatin-like protein [Zea mays] GI:7716464; contains
Pfam profile PF01145: SPFH domain / Band 7 family
Length = 411
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/98 (20%), Positives = 46/98 (46%)
Frame = +1
Query: 391 VLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQ 570
V+Q + +R+ LG +T+++ +++RD + E G++ L + I+D+
Sbjct: 151 VVQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDIMPPHG 210
Query: 571 YLASLGKSQTANVXRDADVGVTLANRNAGIXEAECEKN 684
A++ A + A + + R + I A+ +K+
Sbjct: 211 VRAAMEMQAEAERKKRAQILESEGERQSHINIADGKKS 248
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 206 SVTRHQAHAHPPTMVRFVVGPKQPPETIS 120
S+T Q+H++PPT V P PPE ++
Sbjct: 152 SLTASQSHSNPPTPAAPTVPPPPPPEEVN 180
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 354 VPGQDRQRD*DDC-PANVGGSFASYSRNSYSRRGVQRQGPIRGLGTRSGCAGRRKNG 521
+P RQR ++ P +GG F+SY S R G R G GRR G
Sbjct: 89 LPTGPRQRSEEEMQPGRLGGGFSSYGGRSGGRIGRDRDDSDGSWSGGGGGGGRRPYG 145
>At2g38570.1 68415.m04738 expressed protein ; expression supported
by MPSS
Length = 302
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 4 GKLNKFVIVLVVKCSVCIVKVTVKGFKMGNIHT 102
G+ +F++ +V+ +C+V T+K GN+ T
Sbjct: 164 GESERFLLTDIVRVLLCLVSATLKVVSFGNVFT 196
>At2g17120.1 68415.m01976 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain; supporting cDNA
gi|16226688|gb|AF428464.1|AF428464
Length = 350
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = -2
Query: 473 NWSLSLYTSSTVRVPRIARK*PSNVCRTVILISLTVLPRNCSQAVVRSSSSFMILHWATP 294
NW+LS +SS ++ P + C +L + PR+C A + + F A P
Sbjct: 258 NWTLSCQSSSEIKPSNWQTCPPFSQCDGALLNASCRQPRDCVYAGYSNQTIFTTASPACP 317
Query: 293 VTVSGTPWAVSTYSHIGFNVI 231
+ +A + S F ++
Sbjct: 318 DSAGPDNYASTLSSSFNFVIV 338
>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
contains Pfam profiles: PF02538 hydantoinase
B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
PF05378 hydantoinase/oxoprolinase N-terminal region
Length = 1266
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +1
Query: 34 VVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQ 213
V+ C C+V V + N + P E I +G P+ K +VGG VTDV
Sbjct: 1044 VIYCLRCLVNVDIPL----NQGCLAPVEIRIPAGSFLSPSEKAAVVGGNVLTSQRVTDVV 1099
Query: 214 RISLEVMTLNPMC 252
+ + + C
Sbjct: 1100 LTAFQACACSQGC 1112
>At4g33870.1 68417.m04806 peroxidase, putative similar to peroxidase
[Spinacia oleracea] gi|1781334|emb|CAA71494
Length = 358
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 744 FEESRVVFYFGAHRIFDVHXVFFTFRFXNTS 652
F E V FGAH I H FF R N S
Sbjct: 219 FNERETVSLFGAHSIGITHCTFFKNRLYNFS 249
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -2
Query: 542 VKDRISIPILPTSGAATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRT 390
+K RI + + + S T P + SL L S+ PR++++ C T
Sbjct: 8 LKQRIRQDLAESLSVSVSETNPQSQSLKLLLDSSSHKPRLSKREKRRNCET 58
>At1g30360.1 68414.m03712 early-responsive to dehydration stress
protein (ERD4) nearly identical to ERD4 protein
(early-responsive to dehydration stress) [Arabidopsis
thaliana] GI:15375406; contains Pfam profile PF02714:
Domain of unknown function DUF221
Length = 724
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 466 DQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVXR 615
+QFA LVR++ AP G+ E + +++Y + Y SL ++ + V +
Sbjct: 190 EQFAILVRDMPAPPDGQTQKEFIDSYFREIYPETFY-RSLVATENSKVNK 238
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,294,952
Number of Sequences: 28952
Number of extensions: 391259
Number of successful extensions: 1138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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