Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0316
(750 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 413 e-114
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 405 e-112
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 208 e-105
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 366 e-100
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 326 5e-88
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 227 2e-85
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 290 2e-77
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 286 5e-76
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 280 3e-74
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 264 2e-69
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 256 4e-67
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 173 4e-42
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 140 3e-32
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 125 1e-27
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 122 9e-27
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 119 9e-26
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 119 9e-26
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 117 3e-25
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 113 3e-24
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 109 5e-23
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 108 1e-22
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 106 5e-22
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 105 1e-21
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 104 2e-21
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 103 5e-21
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 103 5e-21
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 97 3e-19
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 97 3e-19
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 95 2e-18
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 93 9e-18
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 85 2e-15
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 83 9e-15
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 79 1e-13
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 78 3e-13
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.049
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.35
UniRef50_A7CME0 Cluster: Putative uncharacterized protein precur... 35 2.5
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.5
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 35 2.5
UniRef50_Q3JIA3 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 7.5
UniRef50_Q3JNN0 Cluster: Putative uncharacterized protein; n=1; ... 33 7.5
UniRef50_Q01LW6 Cluster: OSIGBa0101A01.5 protein; n=1; Oryza sat... 33 9.9
UniRef50_A7SAM3 Cluster: Predicted protein; n=1; Nematostella ve... 33 9.9
UniRef50_A7D428 Cluster: Putative uncharacterized protein; n=1; ... 33 9.9
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.9
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 413 bits (1018), Expect = e-114
Identities = 190/236 (80%), Positives = 210/236 (88%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL APK MLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QR
Sbjct: 9 LKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
L+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69 LVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
G K VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRN
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 710
LGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG+
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGV 244
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 405 bits (997), Expect = e-112
Identities = 180/236 (76%), Positives = 210/236 (88%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ APKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR
Sbjct: 9 LKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV++
Sbjct: 69 FIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRK 128
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
+ G K +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNLCM+TGG N
Sbjct: 129 IFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 710
LGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG K +ISLPRGKGI
Sbjct: 189 LGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGI 244
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 208 bits (509), Expect(2) = e-105
Identities = 86/125 (68%), Positives = 111/125 (88%)
Frame = +3
Query: 336 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 515
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 516 LCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 695
+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG K ++SLP
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSLP 271
Query: 696 RGKGI 710
RGKGI
Sbjct: 272 RGKGI 276
Score = 198 bits (482), Expect(2) = e-105
Identities = 92/112 (82%), Positives = 100/112 (89%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ APKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR
Sbjct: 9 LKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 338
IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 69 FIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 366 bits (900), Expect = e-100
Identities = 166/236 (70%), Positives = 198/236 (83%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRLNAPKH MLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+
Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRS 128
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
+ G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN
Sbjct: 129 IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRN 188
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 710
GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI
Sbjct: 189 RGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGI 244
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 326 bits (800), Expect = 5e-88
Identities = 145/236 (61%), Positives = 184/236 (77%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRLNAP H ML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R
Sbjct: 9 LKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++
Sbjct: 69 TIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEK 128
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
G +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG
Sbjct: 129 RVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNG 188
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 710
+GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGKGT+ ++LP KGI
Sbjct: 189 MGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLVNLPLDKGI 244
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 227 bits (554), Expect(2) = 2e-85
Identities = 96/141 (68%), Positives = 120/141 (85%)
Frame = +3
Query: 288 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 467
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 468 IATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLN 647
+ T KI DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLS 195
Query: 648 NVFIIGKGTKAYISLPRGKGI 710
N+F+IGKG +ISLP GKGI
Sbjct: 196 NIFVIGKGNIPWISLPHGKGI 216
Score = 112 bits (269), Expect(2) = 2e-85
Identities = 52/67 (77%), Positives = 57/67 (85%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LK + APKH MLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 9 LKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQH 68
Query: 183 LIKVDGK 203
IK+DGK
Sbjct: 69 FIKMDGK 75
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 290 bits (712), Expect = 2e-77
Identities = 134/246 (54%), Positives = 177/246 (71%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL AP H +L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+R
Sbjct: 23 LKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRR 82
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
L+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V +
Sbjct: 83 LVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQ 142
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
G K +P++VTHDGRTI Y DP ++V+D+++ +I T ++ IKF+ G++ M+T G N
Sbjct: 143 FKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGN 202
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIPPXH 722
+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+ ISLP +G+ P
Sbjct: 203 VGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLISLPAREGVRPSI 262
Query: 723 RRGAGQ 740
G Q
Sbjct: 263 LEGINQ 268
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 286 bits (701), Expect = 5e-76
Identities = 138/231 (59%), Positives = 173/231 (74%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ A +H MLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q
Sbjct: 20 LKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQW 78
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK+++
Sbjct: 79 FIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRK 138
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
+ K +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF++GNLC++TGG N
Sbjct: 139 IFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGN 197
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 695
GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG K +ISLP
Sbjct: 198 WGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNKPWISLP 244
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 280 bits (686), Expect = 3e-74
Identities = 128/235 (54%), Positives = 175/235 (74%)
Frame = +3
Query: 6 KRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KRLNAPK +L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+
Sbjct: 10 KRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNE 69
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 365
I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV
Sbjct: 70 IYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRV 129
Query: 366 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 545
+ G K +PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+LC++ G N+
Sbjct: 130 SIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNI 189
Query: 546 GRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 710
GR+G ++ GS IV +KD G +F+T+ N+F+IGKGTK++ISLPR +G+
Sbjct: 190 GRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKSFISLPRFRGL 244
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 264 bits (646), Expect = 2e-69
Identities = 120/219 (54%), Positives = 157/219 (71%), Gaps = 2/219 (0%)
Frame = +3
Query: 60 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 233
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 234 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 413
MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 414 TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSF 593
TIR+P+P IK+ D+++ D+ KI +F ESGN+C I G N+GRVG I E+H GSF
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSF 317
Query: 594 DIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 710
DI H+KD+ G+ FATRL N+F++G+G K++I LP G G+
Sbjct: 318 DICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGV 356
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 256 bits (627), Expect = 4e-67
Identities = 123/237 (51%), Positives = 158/237 (66%), Gaps = 1/237 (0%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL APK ML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q
Sbjct: 6 LKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQG 65
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV
Sbjct: 66 LVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVN 125
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
+ T VP VTHDG IRYPDP + D+I ++ K +D IK G ++TGG N
Sbjct: 126 LYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGAN 185
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG-TKAYISLPRGKGI 710
GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK +++P+ +G+
Sbjct: 186 RGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGKDLNNLQVTVPKQQGL 242
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 173 bits (421), Expect = 4e-42
Identities = 90/237 (37%), Positives = 147/237 (62%), Gaps = 1/237 (0%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR APK MLDK GG +A P++GPHK EC+PL + L+YA E+ I+ ++
Sbjct: 9 LKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEK 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 69 NIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTK 128
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
+ +PY+V+ G +IR+ DP I + +I++ T+K++++I + ++ G+
Sbjct: 129 KYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKA 187
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK-AYISLPRGKGI 710
GRVG +++ G + + D G+TF+ + +IG+ ++ +I+LP+ +GI
Sbjct: 188 RGRVG-VINTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGI 243
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 140 bits (339), Expect = 3e-32
Identities = 88/243 (36%), Positives = 132/243 (54%), Gaps = 10/243 (4%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LK L AP+ + + +A +P GPH + LPL++ +RN L YA T E K++ +
Sbjct: 10 LKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEG 69
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVK 359
+VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++
Sbjct: 70 HFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIE 128
Query: 360 RVATGPKNVPYLVTHDGRTI--RYPDP------LIKVNDSIQLDIATTKIMDFIKFESGN 515
T L HDGR I R DP + + D++ + + +I IKF G
Sbjct: 129 NKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGA 188
Query: 516 LCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISL 692
+ +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG + ISL
Sbjct: 189 IAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISL 247
Query: 693 PRG 701
P G
Sbjct: 248 PEG 250
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 125 bits (302), Expect = 1e-27
Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 10/232 (4%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL AP + L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 10 LKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTG 69
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV-- 356
I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+
Sbjct: 70 KILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVN 127
Query: 357 KRVATGPKNVPYLVTHDGR--------TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESG 512
K V G N+ L HDGR + + + K DS+ + I I + F G
Sbjct: 128 KTVVKG-GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEG 185
Query: 513 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 668
L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 186 KLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 122 bits (294), Expect = 9e-27
Identities = 78/238 (32%), Positives = 121/238 (50%), Gaps = 16/238 (6%)
Frame = +3
Query: 3 LKRLNAPKHGMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 179
+KRL AP + K GG +APRP GPH + +PL+I +R+ L YA E KI+ +
Sbjct: 12 VKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITR 71
Query: 180 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 359
I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K
Sbjct: 72 GEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIK 131
Query: 360 RVATGPKNVPYLVTHDGRT--IRYPDP------LIKVNDSIQLDI------ATTKIMDFI 497
+ HDG+ + DP + V DS+ L++ + K++D I
Sbjct: 132 NKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHI 191
Query: 498 KFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGK 668
FE G GR+ G VG +V + G D++ +++ G F T + IGK
Sbjct: 192 PFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAIGK 249
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 119 bits (286), Expect = 9e-26
Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 4/234 (1%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LK APK + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 10 LKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSG 69
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
+ VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+
Sbjct: 70 NVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVN 127
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
+T + HDG+ + + V D I L + +I + + + G +ITGG++
Sbjct: 128 KSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKH 187
Query: 543 LGRVGT----IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISL 692
G +GT IV+ +P + + I++S F T + F++G+ A ISL
Sbjct: 188 TGELGTVSEIIVNESSNPNT---IIIENSAKDEFLTLKDYAFVVGEDAPA-ISL 237
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 119 bits (286), Expect = 9e-26
Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 1/231 (0%)
Frame = +3
Query: 6 KRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 365
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 366 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 545
P N L THDGRT D KV D + + KI + IK + GN IT G ++
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHV 183
Query: 546 GRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 695
+ GTI E G S ++VH ++ F+T ++VF+IG +++ P
Sbjct: 184 NQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSP 230
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 117 bits (282), Expect = 3e-25
Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 9/231 (3%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
L+R AP + + V+ +PS GPH L +P+ I LR+ YA T E +I+ R
Sbjct: 12 LRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASR 71
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
+I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R
Sbjct: 72 VIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRR 131
Query: 363 VATGPKNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIATTKIMDFIKFESGNL 518
T HDGR + Y + K D++ + I I+ + FE G L
Sbjct: 132 KMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVGTL 191
Query: 519 CMITGGRNLGRVGTI-VSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 668
++ GRN+G +G I ++ S +V ++D++G T L V +GK
Sbjct: 192 AIVVDGRNVGFMGRINAIQQVFKRSRALVELEDASGAKSRTILQYVLPVGK 242
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 113 bits (273), Expect = 3e-24
Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 3/225 (1%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
L+R +P+ +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 4 LRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKG 63
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 64 YVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIED 123
Query: 363 VATGPKNVPYLVTHDGRTI---RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 533
L HDGR I + + S+ +++ K+MD+ + +
Sbjct: 124 KTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFN 183
Query: 534 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 668
G N+GR GT+++ R D + + F T LN + +IGK
Sbjct: 184 GVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLVIGK 228
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 109 bits (263), Expect = 5e-23
Identities = 58/229 (25%), Positives = 112/229 (48%)
Frame = +3
Query: 6 KRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KR+++ K G++ + S+GPH + + L+ ++ A E K+VK
Sbjct: 10 KRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGF 69
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 365
+ V+GK +P MD +S N+ +R++ G+ T++ I E K+CKV ++
Sbjct: 70 LYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKI 129
Query: 366 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 545
++T D R ++ IKV DS+ + +I+ +KFE G+LC+IT G++L
Sbjct: 130 INASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHL 189
Query: 546 GRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISL 692
G + I + ++H++ G + +++ +IG+ + +SL
Sbjct: 190 GTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSILSL 238
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 108 bits (260), Expect = 1e-22
Identities = 69/191 (36%), Positives = 97/191 (50%), Gaps = 4/191 (2%)
Frame = +3
Query: 3 LKRLNAPKHGMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 179
L+R AP + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ +
Sbjct: 4 LRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISR 63
Query: 180 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 359
+KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+
Sbjct: 64 GYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVE 123
Query: 360 RVATGPKNVPYLVTHDGR---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 530
L HDGR T IK DS+ D+ I I + G ++
Sbjct: 124 GKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVI 183
Query: 531 GGRNLGRVGTI 563
G N+G GT+
Sbjct: 184 HGSNVGFSGTL 194
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 106 bits (255), Expect = 5e-22
Identities = 74/233 (31%), Positives = 110/233 (47%), Gaps = 7/233 (3%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL AP + K + + + GPH LP+ ++LR + A +EV KI+ QR
Sbjct: 5 LKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILHQR 63
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
+ V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK++
Sbjct: 64 DVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRN 123
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATT-----KIMDFIKFESGNLCMI 527
T L G + D K DS+ + + T +I+D + GN+ MI
Sbjct: 124 KTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMI 182
Query: 528 TGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGKGTKA 680
GG++ G+VG IV R S ++ DS G F T VF++G+ A
Sbjct: 183 VGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGRSAIA 235
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 105 bits (252), Expect = 1e-21
Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 1/222 (0%)
Frame = +3
Query: 6 KRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KRL+ PK + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 5 KRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGK 64
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 365
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 65 VLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNK 123
Query: 366 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 545
T L +DG I + DS+ L I ++ +KFE GNL M+ GG++
Sbjct: 124 TTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHS 182
Query: 546 GRVGTIVS-RERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 668
G G I+ RE + V I T F T + V +IG+
Sbjct: 183 GETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE 222
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 104 bits (250), Expect = 2e-21
Identities = 75/230 (32%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 4 ITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDG 63
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 64 KVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMN 123
Query: 363 VATGPKNVPYLVTHDGRTIRYP-DPLIKVN----DSIQLDIATTKIMDFIKFESGNLCMI 527
T V L DGR I + L + N ++++++ KI + G MI
Sbjct: 124 KTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMI 183
Query: 528 TGGRNLGRVGTI--VSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGK 668
GGRN G G I + ++ + +V ++ G TF T L NV IG+
Sbjct: 184 IGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGE 233
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 103 bits (247), Expect = 5e-21
Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 2/201 (0%)
Frame = +3
Query: 69 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 248
P+ H + +P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 249 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRY 425
SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 88 SIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVT 146
Query: 426 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSF-DIV 602
I +D + + I +I + +K G+ ITGG ++G + TI S E S ++V
Sbjct: 147 DRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATIKSIEVKKSSVKNMV 206
Query: 603 HIKDSTGHTFATRLNNVFIIG 665
++ + F+T + +F++G
Sbjct: 207 YLNEG----FSTIKDYMFVVG 223
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 103 bits (247), Expect = 5e-21
Identities = 67/226 (29%), Positives = 107/226 (47%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ AP+ + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 6 LKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEG 65
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 66 KVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVN 123
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
L HDG T+ + K DS+ L + KI + G+L M+T G++
Sbjct: 124 KTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKH 182
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKA 680
G +G + + S + + F T VF+IGK + A
Sbjct: 183 SGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDSPA 228
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 97.5 bits (232), Expect = 3e-19
Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 2/223 (0%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
+KRL P+ L + ++ +P+ G H C+PL + LR+ L A E +++ R
Sbjct: 6 MKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATR 65
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
+ VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 66 QVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVMG 123
Query: 363 VATGPKNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 539
+T + HDGR I D L D++ + + + F G +TGG
Sbjct: 124 KSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGS 183
Query: 540 NLGRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIG 665
++G +VSR+ + + V D F T + VFIIG
Sbjct: 184 HIGITAKVVSRDIKRSSKPNEVQFPD-----FGTVADYVFIIG 221
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 97.5 bits (232), Expect = 3e-19
Identities = 55/186 (29%), Positives = 92/186 (49%)
Frame = +3
Query: 6 KRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KR++ PK + K + GPH + +PL + LR+ L E +++ +
Sbjct: 6 KRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGN 65
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 365
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 66 VLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGK 124
Query: 366 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 545
+ + + +DG I DSI L + K++ IK+E GNL MI GG +
Sbjct: 125 TSIKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHA 183
Query: 546 GRVGTI 563
G VG+I
Sbjct: 184 GEVGSI 189
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 94.7 bits (225), Expect = 2e-18
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 1/231 (0%)
Frame = +3
Query: 6 KRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 365
+ VDGKV + GFMD +++ + L + YD KG+ I E KL +VK
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 366 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 545
+ HDG T+ IK DS+ + I +I+D +KF GN ITGG ++
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHV 183
Query: 546 GRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 695
G + TI S E + ++VH+ + F+T + VF++G K S+P
Sbjct: 184 GEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG-SPKYTFSMP 229
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 92.7 bits (220), Expect = 9e-18
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 1/175 (0%)
Frame = +3
Query: 42 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 221
K G + +PS GPH +P+ ++LR+ L A EV ++ + VDG+ D
Sbjct: 23 KSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYK 82
Query: 222 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLV 398
+P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+ + Y +
Sbjct: 83 FPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTL 142
Query: 399 THDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 563
T DGRT D K + + +I KI + I E I G++ GR+G I
Sbjct: 143 T-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVI 195
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 85.0 bits (201), Expect = 2e-15
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 4/224 (1%)
Frame = +3
Query: 6 KRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KR+ AP + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 365
+ ++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 366 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA---TTKIMDFIKFESGNLCMITGG 536
T + G + K DS+ + IA + + GN+ +I GG
Sbjct: 124 TTIKGGKTQINLTSGANF-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGG 182
Query: 537 RNLGRVGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFIIG 665
++ + G +V S + V I+D+ G+ F T + V++IG
Sbjct: 183 QHTMKTGKLVEILVQESSLPNRVIIEDADGNKFETIEDYVYMIG 226
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 82.6 bits (195), Expect = 9e-15
Identities = 54/157 (34%), Positives = 82/157 (52%)
Frame = -2
Query: 710 NALAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTAS 531
+ LA +RD RL A D EHV + R + ++ GVL VHN EG + LA D V +
Sbjct: 37 DTLALGKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTT 96
Query: 530 RDHTQVPRLKLDEVHNLRSCDV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDF 351
DH Q ++LD + +L DV +G+ D + V +GAA+++ R+ L
Sbjct: 97 GDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHL 156
Query: 350 TQLVLSLLRGDTVDCESALNIID*TKQFISLLN*DNI 240
QLVL D V ES+L ++D + FI+L + D++
Sbjct: 157 AQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 79.0 bits (186), Expect = 1e-13
Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 2/221 (0%)
Frame = +3
Query: 6 KRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KRL+ P +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 6 KRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDN 64
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 365
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 65 VLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTK 124
Query: 366 ATGPKNVPYLVTHDGRT-IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
L HDG T I D DSI + +++ ++E G L G +
Sbjct: 125 THVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAH 184
Query: 543 LGRVGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFII 662
G VG + + PGS + V + G F T V +I
Sbjct: 185 AGEVGEVEEIQVTPGSAQNNVIVSQDEGEGFETVEEYVVVI 225
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 77.8 bits (183), Expect = 3e-13
Identities = 51/187 (27%), Positives = 81/187 (43%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR AP + + G + G H +P + LR+ L T E K +
Sbjct: 10 LKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSG 69
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 70 NVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTS 129
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
+ + HDGR++ D + V DS + + KI+ + E G ++T G N
Sbjct: 130 KTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKILKVARMEKGAHAVVTRGTN 188
Query: 543 LGRVGTI 563
G GTI
Sbjct: 189 AGSTGTI 195
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = -2
Query: 704 LAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRD 525
L R+R RL LA+ EH+ Q + + G+L+V ++G + L D ++T V ++
Sbjct: 105 LTLRKRYPRLCPLANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSH 164
Query: 524 HTQVPRLKLDEV 489
H +P +K DEV
Sbjct: 165 HDNIPNIKFDEV 176
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.049
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +3
Query: 72 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 251
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 252 IEKTNELFRLIYDVKG 299
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.35
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -2
Query: 272 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 93
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 92 QLV 84
Q +
Sbjct: 110 QFI 112
>UniRef50_A7CME0 Cluster: Putative uncharacterized protein
precursor; n=1; Ralstonia pickettii 12D|Rep: Putative
uncharacterized protein precursor - Ralstonia pickettii
12D
Length = 533
Score = 34.7 bits (76), Expect = 2.5
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 530 GRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQ-RVHNRQGHEG-VHLAAARQ 703
G+P + A HRV +E + R H+ + H+ EQ RVH R G EG + A Q
Sbjct: 317 GKPAVQALEAHRVDQERADRRRDAPHRNVQRFHVDARAEQERVHQRDGAEGHEDVFAEEQ 376
Query: 704 GH 709
H
Sbjct: 377 AH 378
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 34.7 bits (76), Expect = 2.5
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 437 YQSQRFHPVRHRNYEDYGLHQV*VWELVY--DHGRP*LGACGHHRVPRETSRLLRHCAHQ 610
+ + + HP+R Y G+ V +LV DH R A HR R RL + H+
Sbjct: 31 FHAFKIHPLRIA-YRT-GIDVTLVQQLVSGEDHQRLFKAALARHRKSRRDQRLHKSLRHK 88
Query: 611 GLHGTHLRHEVEQRVHNRQGHE 676
G+ L+H++EQ +G +
Sbjct: 89 GIAQAELQHKIEQDYQETKGQK 110
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 34.7 bits (76), Expect = 2.5
Identities = 32/103 (31%), Positives = 44/103 (42%)
Frame = -3
Query: 538 RPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 359
RPP H SN + S + A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 358 LTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 230
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_Q3JIA3 Cluster: Putative uncharacterized protein; n=1;
Burkholderia pseudomallei 1710b|Rep: Putative
uncharacterized protein - Burkholderia pseudomallei
(strain 1710b)
Length = 266
Score = 34.3 bits (75), Expect = 3.3
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 749 AMRLSRSSPMVRRNALAARQRDVRLRALADYEHVVQPRGEGVSR 618
A R S +SP RRNA+AAR+ R R+ Y + + P G R
Sbjct: 142 ATRASSASPRGRRNAIAARRPRNRYRSQRRYRYTLAPASSGPHR 185
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 7.5
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 393 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 527
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_Q3JNN0 Cluster: Putative uncharacterized protein; n=1;
Burkholderia pseudomallei 1710b|Rep: Putative
uncharacterized protein - Burkholderia pseudomallei
(strain 1710b)
Length = 1075
Score = 33.1 bits (72), Expect = 7.5
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 743 RLSRSSPMVRRNALA--ARQRDVRLRALADYEHVVQPRGEGVSR 618
RL R + +R +A AR ++LR LA HV QPRGE V R
Sbjct: 880 RLLRGAHHLRDRVVAGVARGAQMQLRVLACRHHVAQPRGERVGR 923
>UniRef50_Q01LW6 Cluster: OSIGBa0101A01.5 protein; n=1; Oryza
sativa|Rep: OSIGBa0101A01.5 protein - Oryza sativa
(Rice)
Length = 1321
Score = 32.7 bits (71), Expect = 9.9
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +2
Query: 509 WELVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHL 688
W L Y H P + H + PR+ R+ ++ TH+R+ R+ H G L
Sbjct: 148 WGLSYGHSNP--TSASHCKQPRQLRRIKLWRVYED-QATHIRY-------GRRAHGGRRL 197
Query: 689 AAARQGHSAXPSARSGTS 742
AA + S + SGTS
Sbjct: 198 AATKPAESGGFAVESGTS 215
>UniRef50_A7SAM3 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 484
Score = 32.7 bits (71), Expect = 9.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 663 GKGTKAYISLPRGKGIPPXHRRGAGQAH 746
G+G A PRG+G+PP RG GQ +
Sbjct: 255 GRGLPAGRGAPRGRGVPPPPPRGGGQGY 282
>UniRef50_A7D428 Cluster: Putative uncharacterized protein; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: Putative
uncharacterized protein - Halorubrum lacusprofundi ATCC
49239
Length = 289
Score = 32.7 bits (71), Expect = 9.9
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 719 VRRNALAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVH 600
+RR+ A R+ RLR ADYE + P E V R D H
Sbjct: 127 IRRSPAAYRRNLSRLRERADYERLTDPEHERVFRSGKDCH 166
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.9
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 33 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 194
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 822,253,954
Number of Sequences: 1657284
Number of extensions: 18481210
Number of successful extensions: 61495
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 57852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61405
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -