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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0316
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             395   e-110
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      30   1.7  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   5.3  
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)                29   5.3  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  395 bits (973), Expect = e-110
 Identities = 175/236 (74%), Positives = 206/236 (87%)
 Frame = +3

Query: 3    LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
            +KRLNAPKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQR
Sbjct: 433  MKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQR 492

Query: 183  LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
            LIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+R
Sbjct: 493  LIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRR 552

Query: 363  VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
            V  G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN
Sbjct: 553  VDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRN 612

Query: 543  LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 710
            +GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+
Sbjct: 613  MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGV 668


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +3

Query: 309 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 488
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 489 DFIKFESGNLCM 524
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 214  SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSN 35
            S+L F    M R   +++  F + AY   F   I + + S NL   +  L  Y   ++  
Sbjct: 2952 SILFFVLNDMGRIDPMYQ--FSLDAYIDLFNNSIEKSQRSPNLDNRIQNLNEYHTYAVYK 3009

Query: 34   XPCLGAFKRFK 2
              C G F+R K
Sbjct: 3010 YTCRGLFERHK 3020


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +3

Query: 135 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 302
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 122 EES--SEVCFDRKRSPENCE 175
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
          Length = 560

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +3

Query: 21  PKHGMLDKLGGVYAPRPSTGPHKLRECLP-LVIFLRNRLKYALTGNEVLKIVKQRLI--K 191
           PKHG+  + G V+         K  E  P  ++F++ R+K  L G  + ++V++     +
Sbjct: 138 PKHGLFARPGVVHPHSDVDMISKTSEISPNAIVFIQTRMKRMLAGMRLRRLVERSGFERE 197

Query: 192 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 317
           +D  V+  P      ++ +S +   E F    D +  F I+R
Sbjct: 198 IDKHVQNTPASATASINQLS-DYLTECFST--DREKAFAIYR 236


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -3

Query: 199 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 83
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +3

Query: 327  EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 497
            E+A   +C++ R+   P+    LV   G   +++      I   +  Q+ +     +  +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030

Query: 498  KFESGNLCMITGGRNLGRV 554
            K +  NLC   G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,962,856
Number of Sequences: 59808
Number of extensions: 592074
Number of successful extensions: 1853
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1840
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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