BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0316 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 395 e-110 SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 30 1.7 SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 5.3 SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17) 29 5.3 SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 >SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 687 Score = 395 bits (973), Expect = e-110 Identities = 175/236 (74%), Positives = 206/236 (87%) Frame = +3 Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182 +KRLNAPKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQR Sbjct: 433 MKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQR 492 Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362 LIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+R Sbjct: 493 LIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRR 552 Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542 V G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN Sbjct: 553 VDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRN 612 Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 710 +GRVG + RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+ Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGV 668 >SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) Length = 482 Score = 30.3 bits (65), Expect = 1.7 Identities = 17/72 (23%), Positives = 35/72 (48%) Frame = +3 Query: 309 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 488 I +TP+ K C+V R++TGP +++ +G + +++ ++ + + + Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345 Query: 489 DFIKFESGNLCM 524 F FE G CM Sbjct: 346 -FPDFEKGVACM 356 >SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3511 Score = 29.5 bits (63), Expect = 3.0 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = -3 Query: 214 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSN 35 S+L F M R +++ F + AY F I + + S NL + L Y ++ Sbjct: 2952 SILFFVLNDMGRIDPMYQ--FSLDAYIDLFNNSIEKSQRSPNLDNRIQNLNEYHTYAVYK 3009 Query: 34 XPCLGAFKRFK 2 C G F+R K Sbjct: 3010 YTCRGLFERHK 3020 >SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1776 Score = 28.7 bits (61), Expect = 5.3 Identities = 11/56 (19%), Positives = 28/56 (50%) Frame = +3 Query: 135 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 302 +Y L ++ + + L++ G + P+YP+ ++ ++ +N+LF + R Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651 >SB_11242| Best HMM Match : MAM (HMM E-Value=0) Length = 348 Score = 28.7 bits (61), Expect = 5.3 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%) Frame = +2 Query: 122 EES--SEVCFDRKRSPENCE 175 EES +E+C DRKR P++CE Sbjct: 76 EESRYNELCHDRKRGPDDCE 95 >SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17) Length = 560 Score = 28.7 bits (61), Expect = 5.3 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Frame = +3 Query: 21 PKHGMLDKLGGVYAPRPSTGPHKLRECLP-LVIFLRNRLKYALTGNEVLKIVKQRLI--K 191 PKHG+ + G V+ K E P ++F++ R+K L G + ++V++ + Sbjct: 138 PKHGLFARPGVVHPHSDVDMISKTSEISPNAIVFIQTRMKRMLAGMRLRRLVERSGFERE 197 Query: 192 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 317 +D V+ P ++ +S + E F D + F I+R Sbjct: 198 IDKHVQNTPASATASINQLS-DYLTECFST--DREKAFAIYR 236 >SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 141 Score = 27.9 bits (59), Expect = 9.3 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Frame = -3 Query: 199 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 83 PS++ F +FRT FP + RF R+ IT ++LW Sbjct: 84 PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128 >SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4700 Score = 27.9 bits (59), Expect = 9.3 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Frame = +3 Query: 327 EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 497 E+A +C++ R+ P+ LV G +++ I + Q+ + + + Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030 Query: 498 KFESGNLCMITGGRNLGRV 554 K + NLC G +N+G V Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,962,856 Number of Sequences: 59808 Number of extensions: 592074 Number of successful extensions: 1853 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1657 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1840 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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