Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0316
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 333 9e-92
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 35 0.071
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.5
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.5
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 4.7
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 4.7
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 4.7
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 4.7
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 28 6.2
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 28 6.2
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.2
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 333 bits (818), Expect = 9e-92
Identities = 156/236 (66%), Positives = 185/236 (78%)
Frame = +3
Query: 3 LKRLNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL AP H MLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+ QR
Sbjct: 8 LKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQR 67
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 362
+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCKVK
Sbjct: 68 VVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKS 127
Query: 363 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 542
V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL +TGGRN
Sbjct: 128 VRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRN 187
Query: 543 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 710
+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G GI
Sbjct: 188 VGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGI 243
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 34.7 bits (76), Expect = 0.071
Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +2
Query: 548 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHSAXPS 724
A HH E H H G HGTH H GH G H A A GH
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHG 523
Query: 725 ARSG 736
G
Sbjct: 524 THHG 527
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +2
Query: 557 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGH 709
HH E H H G HGTH H GH G H A A GH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH 576
Score = 33.1 bits (72), Expect = 0.22
Identities = 26/97 (26%), Positives = 33/97 (34%)
Frame = +2
Query: 458 PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRH 637
P H ++ ++G+H HG G HH H H HG H H
Sbjct: 600 PAHHGHHGEHGVH----------HGHHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDH--H 647
Query: 638 EVEQRVHNRQGHEGVHLAAARQGHSAXPSARSGTSAS 748
VH+ GH G H + A GH G S
Sbjct: 648 HGSHGVHH--GHHGTHHSLAHHGHHGGHGTHHGAHHS 682
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +2
Query: 527 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 697
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH-HGA 701
Query: 698 RQGH 709
GH
Sbjct: 702 HHGH 705
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/52 (36%), Positives = 21/52 (40%)
Frame = +2
Query: 557 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHS 712
HHR E AH G HGTH H E H+ H G H + HS
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHS 451
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
Frame = +2
Query: 413 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 589
HH + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 590 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 685
AH G HG H H G GVH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH 586
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 596 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGH 709
H AH HG H RH E H+ H G H GH
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGH 428
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +2
Query: 554 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 685
G H P H H HG H H ++ H+ GH H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/105 (25%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Frame = +2
Query: 413 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELV-YDHGRP*LGACGHH--RVPRET 580
HH + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 581 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGH 709
+ AH G HG H H H G H G H GH
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGH 657
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/102 (24%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Frame = +2
Query: 413 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACG-HHRVPRETSR 586
HH + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 587 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHS 712
H H HG H H H G G H HS
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHS 557
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +2
Query: 557 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHSAXPSARSG 736
HH E H H G HG+H H H GH H A A GH G
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGH---HESHGHG--HHAPAHHGHHGEHGVHHG 614
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 297 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 428
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 515 LVYDHGRP*LGACGHHRVPRETSRLLRH 598
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 515 LVYDHGRP*LGACGHHRVPRETSRLLRH 598
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 413 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 496
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 26 TWXVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSE-VCFDRKRSPENC 172
TW +G + C C N P++ + F E E C D K P NC
Sbjct: 155 TWGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPDNKWGP-NC 203
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 26 TWXVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSE-VCFDRKRSPENC 172
TW +G + C C N P++ + F E E C D K P NC
Sbjct: 155 TWGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPDNKWGP-NC 203
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 26 TWXVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSE-VCFDRKRSPENC 172
TW +G + C C N P++ + F E E C D K P NC
Sbjct: 155 TWGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPDNKWGP-NC 203
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 26 TWXVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSE-VCFDRKRSPENC 172
TW +G + C C N P++ + F E E C D K P NC
Sbjct: 155 TWGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPDNKWGP-NC 203
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 85 WGPVDGLGAYTPPSLSNXPCLGAF 14
+GP+ GLG +T P+L P G F
Sbjct: 75 FGPIPGLGNFTLPTLGTLPGFGNF 98
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 85 WGPVDGLGAYTPPSLSNXPCLGAF 14
+GP+ GLG +T P+L P G F
Sbjct: 75 FGPIPGLGNFTLPTLGTLPGFGNF 98
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 454 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 290
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,572,716
Number of Sequences: 27780
Number of extensions: 424652
Number of successful extensions: 1378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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