Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0314
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 54 3e-08
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 47 2e-06
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 29 0.64
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 28 1.1
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 28 1.5
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 2.6
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 6.0
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 6.0
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 7.9
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 25 7.9
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 7.9
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 7.9
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 53.6 bits (123), Expect = 3e-08
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 2/168 (1%)
Frame = +1
Query: 70 DFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVN 249
D P + VI+VGT + SI++AA S + VLH+D + YG + S L++ +++
Sbjct: 2 DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIK 61
Query: 250 SDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNIDTTPKLL 429
Q N S K +++ Q + D + + I P+ +
Sbjct: 62 KVDSSQILNDNGSHKSPLKRFEVQ--------------FLNKDLIPKNKGSVIQFHPQEI 107
Query: 430 FSRGPLVELLISSNIARYAEFRCVT--RVLTWLNDQLMPVPCSRADVF 567
F+ LV+LL + I +Y + R+LT N++ + VP SRAD+F
Sbjct: 108 FASSELVKLLSETKIYKYLLLKPARSFRLLT-SNEEWIKVPESRADIF 154
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +1
Query: 82 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 261
++ VIV+GTG+ E +++ S GK VLH+D +D+YG AS N L + P+
Sbjct: 4 EYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPGEQRPE 63
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 394 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVP 546
R + +D PK L + G L +LI +++ RY EF+ + + + ++ VP
Sbjct: 69 RDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 29.1 bits (62), Expect = 0.64
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = +1
Query: 253 DPDRQKQVYNLSEKWFIEKESAQGE--TTDENKGEPRKVWSQADFAAEYRKFNIDTTPKL 426
DP Q +V K + K S T ++ GEP+ A+ Y F + PKL
Sbjct: 302 DPAHQDEVEVFGRKIIVPKASGNVAWFTFEQLCGEPKSAADYLSLASRYHVFIVSDIPKL 361
Query: 427 LFSRGPLVELLISSNIARY 483
L+ I+ A Y
Sbjct: 362 SIESKDLIHRFITFIDALY 380
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 424 ALELYQC*ISDTPLQNQLGSILFLVHLCFHQLFRLVQ 314
AL QC + PL ++GS FL+ L FH LF +Q
Sbjct: 34 ALFACQCLVLIRPLARKIGSFPFLI-LTFHTLFYPIQ 69
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 91 VIVVGTGMVESIVAAACSRIG-KNVLHMDSSDHYGGLWASYNFEGLQK 231
V+V+G G AAA SR+G K L S D+ G + + F G+ K
Sbjct: 19 VVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQMSCNPAFGGIGK 66
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +1
Query: 247 NSDPDRQKQVYNLSEKWFIEKE-SAQGETTDENKGEPRKVWSQADFAAEYR 396
NSDP + + Y WF + A D+ GE WS D Y+
Sbjct: 240 NSDPQFRPK-YQAKSSWFAPDDPEASWGNLDDGWGETNGSWSSTDDTKHYK 289
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 186 MITRVHVEDILAYPTASSSHYGLDHARSHHDDL 88
+I ++V I+ PTA++ YGLD + H ++
Sbjct: 161 LIAGLNVLRIINEPTAAAIAYGLDRSNQHETNV 193
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 166 HMDSSDHYG-GLWASYNFEGLQKFIKEVNSDPDRQKQVYNLSEKWF 300
H+ +D G LW S + + ++ +I N+DP Q +Y +S+ +
Sbjct: 97 HLCEADQLGLYLWNSTSAKSIRSYIIPTNADP--QNIIYEISQSGY 140
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 187 YGGLWASYNFEGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENK 345
YG + +G+ F +SDP R V++ + +W E +Q + DE K
Sbjct: 859 YGAGLSYSGIDGVLSFFTYRDSDPIRSLSVFDEASEWATTHEFSQRD-IDEAK 910
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 85 FQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEG 222
FQV ++G G + + A S+ G V D ++Y + A+Y G
Sbjct: 5 FQVGIIGFGDMGRLYAEYISKAGWRVNVCDRPENYESIQATYGNGG 50
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +1
Query: 226 QKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFN 405
Q F++E D D +W IE E + E K +P S DF+ E
Sbjct: 202 QPFVEEGEKDYDEAAAAKAGKSEWEIEFEKFKLE----QKKQPDVASSDGDFSDEPESEE 257
Query: 406 IDTTPKLLFS 435
D P+L+ S
Sbjct: 258 RDEVPELVSS 267
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 88 QVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGG 195
Q IV+G G+ +G NVL +D + +GG
Sbjct: 40 QAIVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGG 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,857
Number of Sequences: 5004
Number of extensions: 61161
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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