Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0314
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 75 4e-14
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 50 2e-06
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 48 9e-06
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 48 9e-06
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 46 4e-05
09_04_0425 - 17448906-17449195,17449489-17449600 31 0.88
09_06_0256 + 21887666-21888670 31 1.2
03_05_0980 - 29384046-29384117,29384901-29384998,29385656-293857... 30 2.0
01_03_0233 + 14042548-14044950 30 2.0
03_02_0127 + 5777564-5779879 29 3.5
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 6.2
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 28 6.2
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 28 6.2
01_03_0044 - 11927272-11928516 28 6.2
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76... 28 8.2
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 28 8.2
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 75.4 bits (177), Expect = 4e-14
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Frame = +1
Query: 76 PTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSD 255
PT F V++ GTG+ ES++AAAC+ GK VLH+D + YG L++S L F+ SD
Sbjct: 21 PTSFDVVLCGTGLPESVLAAACAAAGKTVLHVDPNPFYGSLFSSLPLPSLPSFLSPSPSD 80
Query: 256 PDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNIDTT-PKLLF 432
+ + + + S E E G R+F D P+LL+
Sbjct: 81 DPAPSPSPSSAAAVDLRRRSPYSEV--ETSGA---------VPEPSRRFTADLVGPRLLY 129
Query: 433 SRGPLVELLISSNIARYAEFRCVT--RVLTWLNDQLMPVPCSRADVF 567
V+LL+ S + + EF+ V +L W D L PVP SR +F
Sbjct: 130 CADEAVDLLLRSGGSHHVEFKSVEGGTLLYWDGD-LYPVPDSRQAIF 175
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 82 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 261
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K K + P+
Sbjct: 4 EYDVIVLGTGLKECIISGLLSVDGLKVLHMDRNDYYGGESTSLNLTKLWKRFKGNETAPE 63
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Frame = +1
Query: 322 GETTDENKGEPRKVWSQADFAAEY----RKFNIDTTPKLLFSRGPLVELLISSNIARYAE 489
GE+T N + K + + A E+ +++N+D PK + + G LV +LI +++ +Y
Sbjct: 41 GESTSLNLTKLWKRFKGNETAPEHLGVSKEYNVDMVPKFMMANGALVRVLIHTSVTKYLN 100
Query: 490 FRCVTRVLTWLNDQLMPVPCS 552
F+ V + N ++ VP +
Sbjct: 101 FKAVDGSFVYNNGKIHKVPAT 121
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +1
Query: 82 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDP 258
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K + + P
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDKPP 62
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 394 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCS 552
R +N+D PK + + G LV LI +++ +Y F+ V + ++ VP +
Sbjct: 69 RDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPAT 121
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +1
Query: 82 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDP 258
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K + + P
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDKPP 62
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 394 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCS 552
+ +N+D PK + + G LV LI +++ +Y F+ V + ++ VP +
Sbjct: 69 KDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPAT 121
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +1
Query: 82 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDP 258
++ VIV+GTG+ E I++ S VLHMD +D+YGG S N L K K + P
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGTPP 62
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 394 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVP 546
R +N+D PK + + G LV +LI + + +Y F+ V + ++ VP
Sbjct: 69 RDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVP 119
>09_04_0425 - 17448906-17449195,17449489-17449600
Length = 133
Score = 31.1 bits (67), Expect = 0.88
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 432 EQQLWSCINVKFPILRCKISLAPYFSWF 349
++Q++ C ++ FP++ SL YF WF
Sbjct: 44 QRQMFYCTHLNFPVMLATCSLKSYFLWF 71
>09_06_0256 + 21887666-21888670
Length = 334
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 61 MDEDFPTDFQVIVVGTGMVESIVAA-ACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFI 237
+D DF + Q+ G G + +V+A A I + + +++S H G A + I
Sbjct: 161 VDADFVS--QLADAGPGALSELVSAYANGSIQEKLDKVENSGHVEGRAAESDVNVSSPRI 218
Query: 238 KEVNSDPDRQKQVYNLSEK 294
KE N D + +V+++S+K
Sbjct: 219 KEANEDAEEVDKVWDMSKK 237
>03_05_0980 -
29384046-29384117,29384901-29384998,29385656-29385725,
29386260-29386391,29386823-29387083,29387266-29387336,
29387520-29387587,29388676-29388869
Length = 321
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +1
Query: 91 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPDRQK 270
V V+GT + E +++ R + + GGL A Y L K E++S + +K
Sbjct: 101 VDVMGTRLAEEVLSLVQRRPELQKISFVAHS-LGGLIARYAIALLYKSATEIDSHEEHEK 159
Query: 271 QVYNLSEKWFIEKESAQG 324
Q+ ++S I++ G
Sbjct: 160 QITDVSSNQLIDRGKIAG 177
>01_03_0233 + 14042548-14044950
Length = 800
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 596 KRMLMKMLTSIVGYSEEEMNNEFKDW 673
+RML+ ++ ++ ++E E++ EF DW
Sbjct: 185 RRMLLSLVPAVRAHAEREISREFSDW 210
>03_02_0127 + 5777564-5779879
Length = 771
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +1
Query: 223 LQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKF 402
LQ+ +E++ D ++ + LSE E +G T ++N + K Q +
Sbjct: 562 LQQSPEELSEDEFYEEYDFELSELDESGTED-EGPTINKNSYDHLKADGQRPKRISALEQ 620
Query: 403 NIDT-TP-KLLFSRGPLVELLISSNIARYAEFR 495
+ D+ TP KL F RG +VEL SN R +FR
Sbjct: 621 DDDSATPYKLKFKRGKIVELQPDSNGPRKLKFR 653
>10_08_0894 -
21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 268 KQVYNLSEKWFIEKESAQGET 330
+Q ++ EKW +EK +AQGET
Sbjct: 664 RQSHSNLEKWLVEKLTAQGET 684
>06_03_1496 -
30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 597 FSTIPTASGGEYVGSGARNRHQLIVEPGQDAGHASELSVARDVR 466
F+T+ + G YV +R L EPGQ +VAR ++
Sbjct: 240 FNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQ 283
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 256 PDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNI 408
P RQ V+ + W E+ + QG G + WS+A F A YR++N+
Sbjct: 187 PTRQP-VHVFASIWNAEEWATQG-------GRVKTDWSRAPFVATYRRYNV 229
>01_03_0044 - 11927272-11928516
Length = 414
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 82 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASY 210
DF VIVVG G++ S A A + G L ++ D L +S+
Sbjct: 20 DFDVIVVGAGIMGSCAAHAAASRGARALLLERFDLLHHLGSSH 62
>10_01_0053 -
767131-767962,768517-769037,769384-769601,769720-769825,
769958-770017
Length = 578
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 161 TFLPILLQAAATMDSTMPVPTTMTWKSVGKSSSIILVYI 45
TFLPI + T+ ++ +P++MT G + VY+
Sbjct: 121 TFLPIYILGLLTLMASTSLPSSMTSSDAGHQLHSVAVYL 159
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 456 SDLFEHRALR*VPMRDPRPDLAQRSADAGSLLPSRRIRHRKRSVSS 593
+D + A VP +PRP A +A +L SRR+R R SS
Sbjct: 176 ADTIDLTATHPVPYLNPRPIRAVPPPEAMEMLESRRVRARPPPPSS 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,929,950
Number of Sequences: 37544
Number of extensions: 419333
Number of successful extensions: 1295
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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