Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0314
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   82   5e-16
SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         39   0.003
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.073
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_32101| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         29   4.8  
SB_21868| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     28   6.3  
SB_59400| Best HMM Match : UPF0160 (HMM E-Value=8.1)                   28   8.4  
SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0)                28   8.4  
SB_51456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_22893| Best HMM Match : SWIM (HMM E-Value=0.99)                     28   8.4  
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)          28   8.4  

>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/67 (55%), Positives = 50/67 (74%)
 Frame = +1

Query: 373 ADFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCS 552
           +D    +R+FNID  PKLL SRG LVE LIS+NI+ YAEF+ V ++LT+L   +  VPCS
Sbjct: 316 SDLEPYHRQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCS 375

Query: 553 RADVFAT 573
           R+DVF++
Sbjct: 376 RSDVFSS 382



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
 Frame = +1

Query: 67  EDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFI--- 237
           EDFPT++  IV+GTG+ E++VAAA SRIG  VLH+D +D+Y   WAS+ F+GL K+I   
Sbjct: 2   EDFPTEYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFTFDGLLKWIQRN 61

Query: 238 KEVNSDPD 261
           +E+  D D
Sbjct: 62  QEILEDDD 69


>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +1

Query: 82  DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 207
           ++  +V+GTG+ E +++   S   K VLHMD + +YGG  AS
Sbjct: 4   EYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCAS 45



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 376 DFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIA-RYAEFRCVTRVLTWLNDQLMPVPCS 552
           D   + R +N+D  PK L + G LV++L+ + +A +Y  F+ +     +    +  VP +
Sbjct: 64  DSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKVPAN 123

Query: 553 RAD 561
             +
Sbjct: 124 EKE 126


>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +1

Query: 106 TGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 207
           T   E I++ A S  GK VLHMDS   YGG  AS
Sbjct: 15  TRRYECILSGALSVAGKKVLHMDSQKFYGGETAS 48


>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 85  FQVIVVGTGMVESIVAAACSRIGK-NVLHMDSSDHYGGLW 201
           F V V+G G +  +  A C    K +++  + SDH GGLW
Sbjct: 11  FDVAVIGAG-ISGLATAKCLLDDKFSIIVYEQSDHIGGLW 49


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +1

Query: 211 NFEGLQKFIKEVNSDPDRQKQVYNLS-EKW--FIEKESAQGETTD 336
           + + LQK ++E+NSD +R K     + +KW  F+ ++ + G TTD
Sbjct: 251 HLQNLQKELQEINSDTERDKTAAEKAIKKWVDFLIEKYSTGGTTD 295


>SB_32101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 393 ILRC--KISLAPYFSW-FTFVFISCFALCRFLFNK 298
           +LRC   I  A  FSW FT  F   FA C FLF++
Sbjct: 155 VLRCFFVIRFAVLFSWRFTVFFSRRFAFCVFLFSR 189


>SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 299 LLKRNLHKAKQLMKTKVNQEKYGAKLILQRSIGNLTLIQ 415
           L +R L KA ++ KT+++ E  G K  L  +I  L L+Q
Sbjct: 204 LARRTLKKALRISKTRLSGETEGIKKSLAAAIRGLGLVQ 242


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 446 RGPRENNSFGVVSMLNFRYSAAKSAWLHTFLGSPLFSSVVSPCADS 309
           RG  + N+ GV + ++    A +  WL+  L SP F+++V+ CA +
Sbjct: 86  RGDCQLNAKGVENEISDDL-ATREGWLYVQLRSPQFTTLVNACASN 130


>SB_21868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +1

Query: 442 PLVELLISSNIARYAEFRCVTR--VLTWLNDQLMPVPCSRADVFATGSGRYRREKDAHEN 615
           PLV  ++  +  RY   R +TR  +L   + +L    C++ D+F       RR+K  H+ 
Sbjct: 128 PLVLEMVDPD-HRYDSSRSLTRGRILERYDKKLATTGCTKEDLFEMEKKFERRKKGLHQV 186

Query: 616 ADIDCRL*RRGDEQ 657
             +D    RR D Q
Sbjct: 187 PPLDRVPHRREDSQ 200


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 223  LQKFIKEVNSDPDRQKQVY--NLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAA 387
            + K  KE+ ++PD+       + +++W   KE  +   TD    E +K  ++ADF A
Sbjct: 2466 VMKEYKELLANPDKMDSFLKEDYAKRWEPTKEEKEAAKTDPVLAEKQKELTKADFQA 2522


>SB_59400| Best HMM Match : UPF0160 (HMM E-Value=8.1)
          Length = 337

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 272 KCTTYLKNGLLKRNLHKAKQLMKTKVNQEKY---GAKLILQRSIGNLTLIQLQ 421
           KC   LK   +K+ L  A   +KT +NQ+ +     KL+L+ +  +   +QLQ
Sbjct: 252 KCLKILKTRTVKQLLDAASTELKTTINQQCFKISDEKLVLRPTHAHYYQVQLQ 304


>SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0)
          Length = 756

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +1

Query: 100 VGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPDRQKQVY 279
           VG G V   +   C R   ++  +++S  +     S   + L +F  E+N DP +   V 
Sbjct: 353 VGRGYVLRRILRRCIRY--SIEKLNASPGFTASLVSVVIDTLGEFFPELNKDPQQVMDVI 410

Query: 280 NLSEKWFIEKESAQG 324
           N  E  F+ K  A+G
Sbjct: 411 NEEEVQFL-KTLARG 424


>SB_51456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 272 KCTTYLKNGLLKRNLHKAKQLMKTKVNQEKY---GAKLILQRSIGNLTLIQLQ 421
           KC   LK   +K+ L  A   +KT +NQ+ +     KL+L+ +  +   +QLQ
Sbjct: 79  KCLKILKTRTVKQLLDAASTELKTTINQQCFKISDEKLVLRPTHAHYYQVQLQ 131


>SB_22893| Best HMM Match : SWIM (HMM E-Value=0.99)
          Length = 461

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 272 KCTTYLKNGLLKRNLHKAKQLMKTKVNQEKY---GAKLILQRSIGNLTLIQLQ 421
           KC   LK   +K+ L  A   +KT +NQ+ +     KL+L+ +  +   +QLQ
Sbjct: 342 KCLKILKTRTVKQLLDAASTELKTTINQQCFKISDEKLVLRPTHAHYYQVQLQ 394


>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 91  VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGL 198
           ++++G G++   + +  SR+G NV  ++   H GG+
Sbjct: 114 LVLIGAGVIGVELGSVWSRLGANVTAVEFLGHIGGI 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,475,365
Number of Sequences: 59808
Number of extensions: 455708
Number of successful extensions: 1434
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)