Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0313
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.076
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.54
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 29 0.71
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.71
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 28 1.2
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 28 1.6
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 2.2
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 3.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.0
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.0
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 6.6
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 6.6
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.7
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.076
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 355 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 513
I VE QPEDSK T+V +S +EK + + S D A + +++ +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.54
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +1
Query: 358 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 537
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 538 AAAIPEI---KTPEAADAPKLADNPVDEDK 618
+ E+ KTP DAP +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 29.1 bits (62), Expect = 0.71
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +1
Query: 313 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 489
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 490 PNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKP 621
VKK P+ E E P+A AP V+E +P
Sbjct: 506 SEDVKK---EPSEEKKLEVSDE--APKA--APLAESKKVEEKEP 542
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 310 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 480
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.3 bits (60), Expect = 1.2
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +1
Query: 385 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKT 564
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 565 PEAADAPKLADNPVD 609
P AA AP A + VD
Sbjct: 83 P-AAVAPVEATSAVD 96
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = +1
Query: 325 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP---SATDAEGSADSAAIIPN 495
+ ++ +KS+ + V+ + P+ S + QA E P S T+ A A + +
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANK-QAKEMESKMSNSPTQKSKTEENNQAVRAILDAS 585
Query: 496 --MVKKIDL----APTVESDAAAIPEIKTP 567
M K+ DL PT ++++A++P+I P
Sbjct: 586 ATMEKQYDLHRLPTPTSQTESASVPQIANP 615
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 2.2
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 391 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEI-KTP 567
+K+E A +A EE S + A K + V SDA + + KT
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311
Query: 568 EAADAPKLADNPVDEDKPAD 627
E AD + +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 365 KNQLLSLKIQKLKYKLPSLKFQKKKNL 445
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 3.8
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +1
Query: 316 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 483
SS DA AKS + EPA +P + + ++T + EK + TD + A
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956
Query: 484 IIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADIFT 636
+ + V + ++ +V + P++ PK + D D D+ T
Sbjct: 957 DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSD-DTSNDVTT 1006
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 249 VFWGYIVLFGLWYSGYLVVTNW 184
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 331 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 477
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 418 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAIPEIKTPEA 573
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 337 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 474
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 334 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 471
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,420
Number of Sequences: 5004
Number of extensions: 33089
Number of successful extensions: 143
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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