Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0313
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 38 0.009
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /... 35 0.066
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 34 0.088
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 33 0.15
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 33 0.15
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 33 0.20
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 33 0.20
At3g49990.1 68416.m05466 expressed protein 32 0.35
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 32 0.47
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 31 0.82
At5g63550.1 68418.m07976 expressed protein 31 1.1
At1g12080.2 68414.m01397 expressed protein 30 1.4
At1g34590.1 68414.m04299 hypothetical protein 30 1.9
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 29 2.5
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 29 2.5
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 2.5
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 29 2.5
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor... 27 2.9
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ... 29 4.4
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 4.4
At2g02790.1 68415.m00222 calmodulin-binding family protein very ... 29 4.4
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 4.4
At1g76710.2 68414.m08928 SET domain-containing protein (ASHH1) l... 28 5.8
At1g76710.1 68414.m08927 SET domain-containing protein (ASHH1) l... 28 5.8
At1g12080.1 68414.m01396 expressed protein 28 5.8
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 5.8
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 28 7.6
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 37.5 bits (83), Expect = 0.009
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Frame = +1
Query: 331 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA-------TDAEGSADSAAII 489
+ E + +K EE A E +K E++ + ++ EEK S T GSA + I
Sbjct: 260 ELETEVEVVKAEETAEATEQAKVELEGKLEDVIVEEKDSEINSKDEKTSESGSALCSEEI 319
Query: 490 PNMVKKIDLAPTVESDAAAIPEIKTPEAA--DAPKLADNPVDEDKPAD 627
+ +++ + P E++ A I E A + + D P +E+KP++
Sbjct: 320 LSTIQESNTDPIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPSE 367
>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
SEC14-like protein 2 (Alpha-tocopherol associated
protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
taurus}; similar to GI:807956 from [Saccharomyces
cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 573
Score = 34.7 bits (76), Expect = 0.066
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +1
Query: 337 EAKSADIKVEE--PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKI 510
E + ++KVEE PA + + +A E EEKP AE + + A+
Sbjct: 145 EETTTEVKVEEEKPAVPAAEEEKSSEAAPVETKSEEKPE-EKAEVTTEKASSAEE----- 198
Query: 511 DLAPTVESDAAAIPEIKTPEAADAPKLADN-PVDEDKPAD 627
D TVE+ +I + PE+A AP + + V E +P +
Sbjct: 199 DGTKTVEAIEESIVSVSPPESAVAPVVVETVAVAEAEPVE 238
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 34.3 bits (75), Expect = 0.088
Identities = 23/99 (23%), Positives = 49/99 (49%)
Frame = +1
Query: 328 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 507
P A AK+ +K ++ ++ +DS +E + +K KP+A D+ S D + + +
Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDS----DEDSE 196
Query: 508 IDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPA 624
+ T ++ AA + +++D +D +++KPA
Sbjct: 197 DEKPATKKAAPAAAKAASSSDSSDED--SDEESEDEKPA 233
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +1
Query: 322 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 501
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 502 KKIDLAPTVESDAAAIPE--IKTPEAADAPKLADNP 603
+++ + A A+ E +K PE +A+ P
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPETTTTAPVAEPP 223
>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +1
Query: 322 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 501
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 502 KKIDLAPTVESDAAAIPE--IKTPEAADAPKLADNP 603
+++ + A A+ E +K PE +A+ P
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPETTTTAPVAEPP 223
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 33.1 bits (72), Expect = 0.20
Identities = 39/135 (28%), Positives = 53/135 (39%)
Frame = +1
Query: 199 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAA 378
E+P +PE K + AP+ +I K E+P K +I+ E
Sbjct: 237 ELPKLPEVPKLE-APKVPEIQKPELPKMPELPKMPEIQKP-ELP----KMPEIQKPELPK 290
Query: 379 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEI 558
PE K E+ TV E+ K E P + IP V K +L E A+PEI
Sbjct: 291 VPEVPKPELP-TVPEVPKSEAPKFPEIP--KPELPKIPE-VPKPELPKVPEITKPAVPEI 346
Query: 559 KTPEAADAPKLADNP 603
PE P+L P
Sbjct: 347 PKPELPTMPQLPKLP 361
Score = 28.7 bits (61), Expect = 4.4
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 2/137 (1%)
Frame = +1
Query: 199 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEA-KSADIKVEEPA 375
E+P PE K ++ P+ +I K EIP E K +I +
Sbjct: 110 ELPKFPEIPKPEL-PKMPEIPKPELPKVPEIQKPELP-KMPEIPKPELPKFPEIPKPDLP 167
Query: 376 AQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNM-VKKIDLAPTVESDAAAIP 552
PE+SK EV + E K E P + IP + K+ P +E A +P
Sbjct: 168 KFPENSKPEVPKLM-ETEKPEAPKVPE----------IPKPELPKLPEVPKLE--APKVP 214
Query: 553 EIKTPEAADAPKLADNP 603
EI+ PE P+L P
Sbjct: 215 EIQKPELPKMPELPKMP 231
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 33.1 bits (72), Expect = 0.20
Identities = 30/99 (30%), Positives = 44/99 (44%)
Frame = +1
Query: 328 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 507
P E K + K EE + E+ KTE ++ AE +EEK SA A I+
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEK-SAAPATVETKKEEILAAPAPI 181
Query: 508 IDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPA 624
+ E+ A P ++T A AP +A+ +E PA
Sbjct: 182 VAETKKEETPVAPAP-VETKPA--APVVAETKKEEILPA 217
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 32.3 bits (70), Expect = 0.35
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +1
Query: 325 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVK 504
+P A+ D+K E P A+P KT Q + E K+E+ +A AE A II K
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE--KREARIIKKQTK 477
Query: 505 KIDLAPTVESDAA 543
+ T + A
Sbjct: 478 MLYCGETQRAQRA 490
>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 342
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -2
Query: 134 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 30
+T+SS+ AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 31.1 bits (67), Expect = 0.82
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Frame = +1
Query: 328 PDAEAKSADIKVEEPAAQPED--------SKT------EVQATVAEISKEEKPSATDA-E 462
P+AEA +VEE P + S+T EV AT AE EK T+
Sbjct: 373 PEAEASVTSAEVEESVCVPAEVTSEEVPSSETPKVVEEEVIATKAEDDSPEKEEQTETLA 432
Query: 463 GSADSAAIIPNMVKKIDLAPTVESDA---AAIPEIKTPEAADAPK------LADNPVDED 615
+A++ ++P + + VE+ +A E+ +PEA + + +A+ PVDE
Sbjct: 433 AAAEAEEVVPPIPETKSEEEIVENSIPPNSATDEVSSPEALASEEVEKEQVVAETPVDEV 492
Query: 616 K-PADIFT 636
K PA + T
Sbjct: 493 KTPAPVVT 500
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 322 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 501
E D + + +++VE+P+ + SK V+ + K+++PS A+GSA S +
Sbjct: 320 EKTDTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPS---AKGSARSGEKSSKQI 376
Query: 502 KKIDLAP 522
K +P
Sbjct: 377 AKSTSSP 383
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/88 (25%), Positives = 43/88 (48%)
Frame = +1
Query: 316 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 495
+ E+ EA+ D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 57 NEEVVVEEAEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVEE 111
Query: 496 MVKKIDLAPTVESDAAAIPEIKTPEAAD 579
KK ++ +++ AA E+ +A +
Sbjct: 112 -EKKTEVVEEKQTEVAAAEEVAVEKAEE 138
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 29.9 bits (64), Expect = 1.9
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +1
Query: 325 IPDAEAKSADIKVEEPAAQPEDSKT-EVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 501
IPDA A D + P A PE S+ V A S DA ++ +IP+
Sbjct: 436 IPDAAAP-VDAGLISPRAAPEASRDGNVIPDAAAPVDAGLISLRDAPEASRDGNVIPDAA 494
Query: 502 KKIDLAPTVESDAAAIPEIKTPEAADAPKLAD 597
+D AP+ +A P + EA A ++D
Sbjct: 495 APVDAAPSEAQEAE--PSVAASEAVVALPVSD 524
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 358 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPTV 528
K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V
Sbjct: 344 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 403
Query: 529 ESDAAAIPEIKTP 567
+ +A KTP
Sbjct: 404 TQEDSAFNTEKTP 416
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 358 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPTV 528
K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V
Sbjct: 605 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 664
Query: 529 ESDAAAIPEIKTP 567
+ +A KTP
Sbjct: 665 TQEDSAFNTEKTP 677
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Frame = +1
Query: 343 KSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPS-ATDAEGSADSAAIIPNMVKKIDLA 519
K K E+P +PE K E A ++ KP + + S+ P K +
Sbjct: 469 KQESPKTEQPKPKPESPKQESPKQEAPKPEQPKPKPESPKQESSKQEPPKPEESPKPEPP 528
Query: 520 PTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPAD 627
ES P+ +TP+ ++PK + KP +
Sbjct: 529 KPEESPKPQPPKQETPKPEESPKPQPPKQETPKPEE 564
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 199 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 375
E P + E KKD+ AP ++ + K E+ + + + A + V EE
Sbjct: 73 ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129
Query: 376 AQPEDSKTEVQATV-AEISKEEK 441
+ E+ K V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152
>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
(CPK2) identical to calcium-dependent protein kinase
isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 646
Score = 27.1 bits (57), Expect(2) = 2.9
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 322 EIPDAEAKSADIKVEEPAAQPED-SKTEVQATVAEISKEEKPSATDAE 462
E+P E+K ++ V+ +A+PE S+++ + T E + E KP T AE
Sbjct: 109 EVPPEESKR-EVVVQPESAKPETKSESKPETTKPETTSETKPE-TKAE 154
Score = 20.6 bits (41), Expect(2) = 2.9
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +1
Query: 211 IPEAKKDDIAPEDS 252
+PE K ++ PE+S
Sbjct: 102 VPEESKQEVPPEES 115
>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
PF04424: Protein of unknown function (DUF544)
Length = 682
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +1
Query: 343 KSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 522
KS D+ ++ +++ +T SKE T +E + + + +
Sbjct: 336 KSEDLNHDQLSSKQSGGETACDVENVSSSKEAIVDVTSSEALSVDKGNLESAKSESSSES 395
Query: 523 TVESDAAAI-PEIK-TPEAADAPKLADNPVDEDKP 621
++SDAA+I P++ + DAP PV D+P
Sbjct: 396 VLKSDAASIDPDLSCRSQHDDAPNAFIPPVSTDEP 430
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 196 DEVPAIPEAKKDDIAPE 246
D+ +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213
>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
similarity to SP|P12036 Neurofilament triplet H protein
{Homo sapiens}; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 636
Score = 28.7 bits (61), Expect = 4.4
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Frame = +1
Query: 313 KSSEIPDAEAKSADIKVEEPAAQ----PEDSKTE-VQATVA---EISKEEKPSATDAEGS 468
K EI DA K ++ +EE + PED K + T++ ++ K+EK D +
Sbjct: 375 KKKEIADAVQK--ELPIEEVSVSLVDAPEDEKMNLIPVTISKESDLDKDEKSLVLD-KPE 431
Query: 469 ADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPAD 627
D K + T E D +A +I+ P+A + + + + KP+D
Sbjct: 432 QDELRTAERDDKAEEELKTAERDDSAEEKIQEPDAQISSENGNVASENTKPSD 484
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +1
Query: 310 AKSSEIPDAEAKSADIKVEEPAAQPED-------SKTEVQATVAEISKEEKPSATDAEGS 468
A E P AE ++ VEE AAQPE + E + A K++K + E
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKK 367
Query: 469 ADSAAIIPNMVK 504
A +AA + V+
Sbjct: 368 AAAAAAATSSVE 379
>At1g76710.2 68414.m08928 SET domain-containing protein (ASHH1) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 1 (ASHH1)
partial cds GI:15488417
Length = 492
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +1
Query: 427 SKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPV 606
+ EEK E +S A+ N+ ++ D PT + +KT + D L+ N
Sbjct: 276 TNEEKEKDISTENHLESTAL--NIQQQSDSTPTPMEEDVVTETVKTETSEDMKLLSQNSQ 333
Query: 607 DEDKP 621
++ P
Sbjct: 334 EDSSP 338
>At1g76710.1 68414.m08927 SET domain-containing protein (ASHH1) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 1 (ASHH1)
partial cds GI:15488417
Length = 492
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +1
Query: 427 SKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPV 606
+ EEK E +S A+ N+ ++ D PT + +KT + D L+ N
Sbjct: 276 TNEEKEKDISTENHLESTAL--NIQQQSDSTPTPMEEDVVTETVKTETSEDMKLLSQNSQ 333
Query: 607 DEDKP 621
++ P
Sbjct: 334 EDSSP 338
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +1
Query: 313 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 492
K+ E E + D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 22 KTVEETVVETEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVE 76
Query: 493 NMVKKIDLAPTVESDAAAIPEIKTPEAAD 579
KK ++ +++ AA E+ +A +
Sbjct: 77 E-EKKTEVVEEKQTEVAAAEEVAVEKAEE 104
>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 793
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 332 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 445
M K+N+ + K+K ++L LK K YK + K Q + L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 331 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 480
+AE K ++KVE + +D + AT+ E EEK +A +A+ +A
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKKDHQAA 459
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,463,045
Number of Sequences: 28952
Number of extensions: 173853
Number of successful extensions: 693
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -