Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0312
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14) 172 3e-43
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_16851| Best HMM Match : ABC_tran (HMM E-Value=6.1e-05) 41 0.001
SB_42212| Best HMM Match : ABC_tran (HMM E-Value=0) 39 0.005
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41) 38 0.009
SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41) 38 0.009
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 37 0.015
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0) 37 0.020
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0) 36 0.027
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0) 35 0.061
SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42) 35 0.081
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42) 34 0.14
SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0) 34 0.14
SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21) 33 0.19
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0) 33 0.25
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) 33 0.33
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0) 33 0.33
SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38) 32 0.57
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0) 32 0.57
SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 31 1.3
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_38475| Best HMM Match : ASC (HMM E-Value=3.1e-14) 30 2.3
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053) 29 3.0
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_52472| Best HMM Match : ABC_tran (HMM E-Value=4.62428e-44) 29 4.0
SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4) 29 5.3
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41) 28 7.0
SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_26398| Best HMM Match : Protamine_P2 (HMM E-Value=4) 28 7.0
SB_20258| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-16) 28 7.0
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_48818| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00029) 28 9.3
SB_48424| Best HMM Match : PSI (HMM E-Value=0.4) 28 9.3
SB_42532| Best HMM Match : Exo_endo_phos (HMM E-Value=7.2e-16) 28 9.3
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 28 9.3
SB_4370| Best HMM Match : PSI (HMM E-Value=0.4) 28 9.3
>SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14)
Length = 441
Score = 172 bits (418), Expect = 3e-43
Identities = 78/116 (67%), Positives = 96/116 (82%)
Frame = +2
Query: 233 ARSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 412
+R+CTG L HP S+D+KI NFSITF+G ELL D LELN GR+YGL+GLNGCGKS++L
Sbjct: 40 SRACTGVLGSHPMSKDVKIDNFSITFHGVELLTDAKLELNTGRKYGLIGLNGCGKSTMLT 99
Query: 413 ALGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDD 580
A+G+RE+PIPEH DIFHLT E+ ASDKTALQCVMEVD+ER +LE+ AE L+ D+
Sbjct: 100 AIGKREIPIPEHFDIFHLTSEIEASDKTALQCVMEVDKERHRLEEEAEELSKMGDE 155
>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 80.2 bits (189), Expect = 2e-15
Identities = 41/108 (37%), Positives = 64/108 (59%)
Frame = +2
Query: 269 RSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEH 448
+S+DI+I NF + + LL+ L + GRRYGLVG NG GK++LL L +RE+ + +
Sbjct: 203 KSQDIRIENFDLAYGNRSLLKGANLAIAFGRRYGLVGRNGIGKTTLLRTLSKRELFVASN 262
Query: 449 IDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQE 592
I I ++ +E+ + AL+ V+E D ER L K + LA +S +
Sbjct: 263 ISILYVEQEVVGDETPALESVLECDTERFNLLKEEKALAASTSSKSPD 310
>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPI 439
P ++K N S+ +Y G ++L + +++ G R G+ G G GKSSL+AAL R +P
Sbjct: 227 PAHGNVKFENVSLRYYEGGPQVLHNLNIDIKGGERVGVAGRTGAGKSSLVAALFR--MPD 284
Query: 440 PE 445
PE
Sbjct: 285 PE 286
>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1250
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPI 439
P+ + + N S+ +Y E+L+D +N R G+ G G GKSSL++AL R +P
Sbjct: 1005 PKKGAVDLVNVSLAYYPGAPEVLKDVTFSINPAERVGIAGRTGAGKSSLVSALFR--MPD 1062
Query: 440 PE 445
PE
Sbjct: 1063 PE 1064
>SB_16851| Best HMM Match : ABC_tran (HMM E-Value=6.1e-05)
Length = 113
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +2
Query: 593 QLMDVYDRLDDLSADTAEARAANILHGLGF 682
+L +V++RL++L A AE RAA ILHGLGF
Sbjct: 28 KLTEVFERLEELDAAHAEVRAAEILHGLGF 57
>SB_42212| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 301
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPI 439
P ++++ + S+ +Y GS L++ + + + G+VG G GKSSL+AAL R P
Sbjct: 56 PDRGELRLQDVSLAYYEGGSCALEEVNVRIQAKGKVGIVGRTGAGKSSLVAALFRMPEPK 115
Query: 440 PEHI 451
E I
Sbjct: 116 GEVI 119
>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
Length = 1515
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 323 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPE 445
+L+D L++ G R G+VG G GKSS+ AAL R P E
Sbjct: 1351 VLRDITLDVRPGERVGIVGKTGAGKSSVFAALFRMPDPTGE 1391
>SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41)
Length = 474
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
P + + N S+T+ G L+D ++ G + G+VG NG GKSS++ AL R
Sbjct: 61 PSAGHVVCDNVSLTYEKDGLRALKDLTFSVSAGEKIGIVGRNGSGKSSVIHALFR 115
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 281 IKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
+ + + S+ ++ G+ +L+ LE+ + G+VG G GKSSL+AAL R P
Sbjct: 995 LSVQDMSLVYHEGGARVLEGISLEVQPKEKVGIVGRTGAGKSSLVAALFRMPEP 1048
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 326 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPI 439
L D L + + + G GCGK+SLL A+ RE+PI
Sbjct: 417 LSDVSLSAHSSQLVMVTGAVGCGKTSLLMAI-LREIPI 453
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 326 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
L D LE+ ++ G+ G G GKSSLLAAL R P
Sbjct: 850 LDDITLEITAKQKVGIAGRTGAGKSSLLAALFRMPEP 886
>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1184
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
P S + + N + +Y G E+L+ + + G++G G GKSSL+AAL R
Sbjct: 966 PNSGQVTLDNIKLRYYEGGPEILKGVTCKFEGRKNTGIMGRTGSGKSSLVAALMR 1020
>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 36.3 bits (80), Expect = 0.027
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
P + ++ S+ +Y G +L+D + +++G+VG G GKSS++A+L R
Sbjct: 1461 PHDGALTFSHVSLQYYSGGPRVLKDVSFSIEPRQKFGIVGRTGAGKSSIVASLMR 1515
>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +2
Query: 314 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
G+ +L+ LE++ + G+VG G GKSSL+AAL R P
Sbjct: 1088 GTRVLEGVNLEVDPKEKIGIVGRTGAGKSSLVAALFRMPEP 1128
>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1310
Score = 35.1 bits (77), Expect = 0.061
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +2
Query: 326 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
L D LE+ +R G+ G G GKS LLAAL R P
Sbjct: 1085 LDDITLEITAKQRVGIAGRTGAGKSFLLAALFRLPEP 1121
>SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42)
Length = 355
Score = 34.7 bits (76), Expect = 0.081
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPI 439
PR + + S+ +Y G ++L+D + ++ G+ G G GKSS++A+L R
Sbjct: 114 PRHGALLFNHVSLRYYKDGPQVLKDVTFSIEPQQKIGIAGRTGAGKSSIVASLMRMPEAT 173
Query: 440 P 442
P
Sbjct: 174 P 174
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 314 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
G E+L+ + + G++ G+VG G GKSSL+ A+ R P
Sbjct: 1184 GHEVLKRISVHIKDGQKVGVVGRTGAGKSSLVRAIYRMPEP 1224
>SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42)
Length = 347
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 266 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRR-EVP 436
PR + + S+ +Y G ++L+ + ++ G+ G G GKSS++A+L R E
Sbjct: 106 PRHGAVSFSYVSLRYYSDGPQVLKGVTFSIEPQQKIGIAGRTGAGKSSIVASLMRMPEAS 165
Query: 437 IPEHID 454
HID
Sbjct: 166 SGIHID 171
>SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1266
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 314 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
G+ +L LE+ + G+VG G GKSSL+AAL R P
Sbjct: 1038 GTRVLDGVSLEVLPKEKVGIVGRTGAGKSSLVAALFRIREP 1078
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 314 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPI 439
GS L++ L + + G GCGK+SLL A+ +E+PI
Sbjct: 443 GSLALRNVSLSATHDKLVMVTGSVGCGKTSLLMAI-LKEIPI 483
>SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1116
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 266 PRSRDIKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRR-EVP 436
PR + + S+ +Y G ++L+ + ++ G+ G G GKSS++A+L R E
Sbjct: 900 PRHGAVSFSYVSLRYYSDGPQVLKGVTFSIEPQQKIGIAGRTGAGKSSIVASLMRMPEAS 959
Query: 437 IPEHID 454
HID
Sbjct: 960 SGIHID 965
>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
Length = 1033
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 323 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
+L+D + + + G+VG G GKSSLLA L R P
Sbjct: 891 VLKDVSVHIKPAEKVGIVGRTGAGKSSLLATLFRMAEP 928
>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
P + +IKI + + + S L+D ++ G + G+VG G GKSSL AL R
Sbjct: 896 PNTGNIKIDSLDLRYRESLPLALKDISCDIQPGEKIGIVGRTGAGKSSLSLALFR 950
>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 618
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFYGS--ELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
P I N S +++ S E+L + + + G+VG G GKSSLL+ L R P
Sbjct: 30 PDKGKITFDNMSFSYHQSLPEVLHNVTCVIKPSEKVGVVGRTGAGKSSLLSTLFRLAEP 88
>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
Length = 972
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +2
Query: 356 GRRYGLVGLNGCGKSSLLAALGRREVP 436
G + G+VG NG KSSLLAAL R P
Sbjct: 830 GEKVGIVGRNGLEKSSLLAALLRLNTP 856
>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 844
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 320 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
++L+ LE+N G+ LVG +GCGKS+ ++ L R
Sbjct: 683 KVLRGLSLEVNQGQTLALVGPSGCGKSTTVSLLER 717
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 320 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
++L+ L + G+ LVG +GCGKS+L+ + R
Sbjct: 133 KVLKGLHLTIRSGQTVALVGESGCGKSTLIKLVQR 167
>SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38)
Length = 283
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 281 IKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRR-EVPIPEHI 451
+ ++ S+ +Y G ++L+ + ++ G+ G G GKSS++A+L R E HI
Sbjct: 54 VSFSHVSLRYYSDGPQVLKGVTFSVEPQQKIGVAGRTGAGKSSIVASLMRMPEASTGIHI 113
Query: 452 D 454
D
Sbjct: 114 D 114
>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 672
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 323 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
+++ E+N G + G+VG G GKS+L AL R
Sbjct: 437 VIKKLTFEINSGEKIGIVGRTGAGKSTLSLALFR 470
>SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 31.9 bits (69), Expect = 0.57
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 281 IKIANFSITFY--GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPE 445
I N S+++ G + L + E+ R +VG G GKSSL+AAL ++P PE
Sbjct: 778 ITCKNLSLSYQKEGPKALHNLYFEVKPRERISIVGKAGAGKSSLVAAL--FQMPPPE 832
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 311 YGS---ELLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 418
YGS +L D L+L R G+ G G GKSSLL A+
Sbjct: 256 YGSLAKSVLSDITLKLKGSRLIGITGPCGSGKSSLLLAI 294
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 323 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
+L++ + + G+VG G GKSSLLA L R P
Sbjct: 772 VLKNVKFSIRNNEKVGIVGRTGAGKSSLLAVLFRLNNP 809
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 293 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 418
+FS G L + L + G +VG GCGKS+LL+AL
Sbjct: 553 SFSWDVTGQPTLHNINLNIPDGSLVAVVGQVGCGKSTLLSAL 594
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 266 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
P I+I +F + + + +L++ +++ G + G+VG G GKS+L AL R
Sbjct: 1327 PDKGRIQIEDFDLRYRANLPLVLKNISVDIQPGEKIGIVGRTGAGKSTLTLALFR 1381
>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 509 VMEVDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLSADTAEARAANILHGLGFXQ 688
++ D+E++ + +L + E EQL ++ D++ +LS A +L G
Sbjct: 520 ILHCDQEKLSESAIESLLKYLPSPEQMEQLSNMKDQISELSEPEQFAVHLILLMGNYMNT 579
Query: 689 GNAXEG 706
G+ EG
Sbjct: 580 GSRNEG 585
>SB_38475| Best HMM Match : ASC (HMM E-Value=3.1e-14)
Length = 421
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 491 KTALQCVMEVDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLS 631
+T Q MEV+E +++ + L + L E + S+ Q D +LD+LS
Sbjct: 342 ETVRQREMEVEELQMQNQNLLQRLEAVESETSRAQYHDSMQKLDNLS 388
>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
Length = 636
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 647 PLPCRRSNRPDDRIHPSIAPVIHH 576
P CRR+ DR H ++PV+HH
Sbjct: 352 PAVCRRTWTKHDRHHSILSPVVHH 375
>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 284 KIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 418
K+ N S + G+E L+ D L G+ + G+ GCGK+SLL +
Sbjct: 1546 KLINVSYSIPGTEEPLVADLDLVFARGQNVLITGMAGCGKTSLLRVI 1592
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 453 SMCSGIGTSRRPKAASNDDFPHPLSPTSP 367
+M + SR P SN P P+SP+SP
Sbjct: 227 AMLVSLSNSRNPTPFSNPTTPRPISPSSP 255
>SB_52472| Best HMM Match : ABC_tran (HMM E-Value=4.62428e-44)
Length = 322
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 302 ITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 418
IT G ++ E+ G + G NGCGKSSL L
Sbjct: 75 ITPCGDVVVSSLAFEMQPGMHLLITGPNGCGKSSLFRIL 113
>SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 827
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 524 EERVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLSADTAEARAANILHGLG 679
EE K+ + + E++E +E+ M+ Y+ LD+ A N++H +G
Sbjct: 84 EEAEKVVVVESDTSEDEEEEEEEETMESYNELDEPQATYDVIDTYNVMHVVG 135
>SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 218 KMNSEARSCTGSLAVHPRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGC 391
+M+ E + L P DI I + S + GS+ +L++ + + + +VG +G
Sbjct: 203 EMDDEVQGEKDKLTDIPCDEDIIIKDLSFRYLGSDTNVLKELNMTIPAKKITAIVGTSGS 262
Query: 392 GKSSLLAAL 418
GK++L+ L
Sbjct: 263 GKTTLMKLL 271
>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
Length = 235
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 341 LELNCGRRYGLVGLNGCGKSSLLAAL 418
L++ G +VG GCGKS+LL+AL
Sbjct: 196 LDVPAGSLVAVVGQVGCGKSTLLSAL 221
>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
Length = 336
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 293 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
NF T+Y +L++ + G+ LVG +G GKS+++ L R
Sbjct: 147 NFFGTYYRKPVLKNISFTVFPGQTLALVGNSGGGKSTIIRLLYR 190
>SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 323 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 418
LL L + G+ G++G G GKSSLL+AL
Sbjct: 79 LLSGLNLSIRKGQLIGVIGGVGSGKSSLLSAL 110
>SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 311 YGS-ELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 436
YGS E+L+ L++ G L+G +G GKS+LL + E P
Sbjct: 31 YGSNEVLKGISLDVAPGEVVCLIGPSGSGKSTLLRCVNLLEQP 73
>SB_26398| Best HMM Match : Protamine_P2 (HMM E-Value=4)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 521 DEERVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLSADTAEARAANILHGLG 679
D + + EK+ + + D+E ++ M+ Y+ LD+ A NI+H +G
Sbjct: 72 DTDGEEAEKVVVVESDTRDEEEDKKSMESYNELDEPQATYDVIDTYNIMHVVG 124
>SB_20258| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-16)
Length = 525
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 266 PRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPE 445
P+S K+ NF+ TF+ ++L+++ + R L+ L K +A G VP+ +
Sbjct: 195 PKSDKQKLLNFARTFHFTQLVKEPTRITDTSRT--LIDLIFVNKEHRIAISGVVPVPLSD 252
Query: 446 HIDIF 460
H +F
Sbjct: 253 HYLVF 257
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 356 GRRYGLVGLNGCGKSSLLAALGRREVP 436
G GLVG NG GKS+ L L ++ P
Sbjct: 111 GEVLGLVGTNGIGKSTALKILAGKQKP 137
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 266 PRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPE 445
P+S K+ NF+ TF+ ++L+++ + R L+ L K +A G VP+ +
Sbjct: 69 PKSDKQKLLNFARTFHFTQLVKEPTRITDTSRT--LIDLIFVNKEHRIAISGVVPVPLSD 126
Query: 446 HIDIF 460
H +F
Sbjct: 127 HYLVF 131
>SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 317 SELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEHIDI 457
+E+L+ ++N G LVG +G GKS++++ + R P+ +I I
Sbjct: 173 TEVLKALSFKINPGETVALVGPSGGGKSTVISLIERFYDPMTGNIRI 219
>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2362
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 266 PRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPE 445
P+S K+ NF+ TF+ ++L+++ + R L+ L K +A G VP+ +
Sbjct: 1795 PKSDKQKLLNFARTFHFTQLVKEPTRITDTSRT--LIDLIFVNKEHRIANSGVVPVPLSD 1852
Query: 446 HIDIF 460
H +F
Sbjct: 1853 HYLVF 1857
>SB_48818| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00029)
Length = 318
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 266 PRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPE 445
P+S K+ NF+ TF+ ++L+++ + R L+ L K +A G VP+ +
Sbjct: 135 PKSDKQKLLNFARTFHFTQLVKEPTRITDTSRT--LIDLIFVNKEHRIANSGVVPVPLSD 192
Query: 446 HIDIF 460
H +F
Sbjct: 193 HYLVF 197
>SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)
Length = 175
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 646 GACC*YPAWSWLXPREC 696
G C YP W+ L PR+C
Sbjct: 57 GVCSHYPGWTKLVPRDC 73
>SB_42532| Best HMM Match : Exo_endo_phos (HMM E-Value=7.2e-16)
Length = 399
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 266 PRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPE 445
P+S K+ NF+ TF+ ++L+++ + R L+ L K +A G VP+ +
Sbjct: 195 PKSDKQKLLNFARTFHFTQLVKEPTRITDTSRT--LIDLIFVNKEHRIANSGVVPVPLSD 252
Query: 446 HIDIF 460
H +F
Sbjct: 253 HYLVF 257
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 320 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 424
++L L + G+ LVG +GCGKS+++ + R
Sbjct: 668 KVLNGLSLTVRSGQTVALVGESGCGKSTVIKLIQR 702
>SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)
Length = 175
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 646 GACC*YPAWSWLXPREC 696
G C YP W+ L PR+C
Sbjct: 57 GVCSHYPGWTKLVPRDC 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,584,742
Number of Sequences: 59808
Number of extensions: 425473
Number of successful extensions: 941
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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