Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0311
(800 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein. 28 0.100
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 23 2.8
DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein. 23 3.7
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 23 3.7
AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein p... 23 3.7
AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein p... 23 3.7
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 22 5.0
AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein. 22 5.0
AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein. 22 6.5
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 22 6.5
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 21 8.7
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 21 8.7
>AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein.
Length = 556
Score = 27.9 bits (59), Expect = 0.100
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 659 PPDRVXHQNALP-LGNRSRFNVPGTTFTGXDKNRQTNNS 546
PP+ QN LP +G +N+P T+ G N N S
Sbjct: 422 PPEAPLFQNVLPPIGGMMNWNMPSTSVVGDMLNMNWNPS 460
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 628 YHLVTVQDLTSQVQHSRAVIRTDRPTIPA 542
+H+ T + +V HS ++ R+ R TI A
Sbjct: 137 FHIATTSNEFIRVHHSGSITRSIRLTITA 165
>DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein.
Length = 414
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 362 RRKLSFRMLSSWYCRNLRRCRSSICK*ATERVE*ARPDRH 481
R KL+ + W+ R R I AT V P+R+
Sbjct: 256 RTKLTEARIQVWFSNRRARLRKQITSAATPLVRSYAPERY 295
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 22.6 bits (46), Expect = 3.7
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -2
Query: 385 HSEA*LPPPNALHPYYLWVEIK 320
H+ + +P P + P Y W+++K
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVK 203
>AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein
protein.
Length = 210
Score = 22.6 bits (46), Expect = 3.7
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -2
Query: 385 HSEA*LPPPNALHPYYLWVEIK 320
H+ + +P P + P Y W+++K
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVK 203
>AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein
protein.
Length = 253
Score = 22.6 bits (46), Expect = 3.7
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -2
Query: 385 HSEA*LPPPNALHPYYLWVEIK 320
H+ + +P P + P Y W+++K
Sbjct: 182 HNLSSVPQPQPVLPTYKWMQVK 203
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 22.2 bits (45), Expect = 5.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 231 TNVSTYKSDAGVETIKLELQENLISWISNGV 139
T +TYK D + + + L +I+W GV
Sbjct: 1315 TFTTTYKEDVTLPCLAVGLPPPVITWKIKGV 1345
>AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein.
Length = 712
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 331 PINNMGEVHLAEEVKLPNV 387
P+N + EV L +EV+ PN+
Sbjct: 575 PLNAIVEVVLVDEVQSPNL 593
>AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein.
Length = 717
Score = 21.8 bits (44), Expect = 6.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 331 PINNMGEVHLAEEVKLPNV 387
P+N + E+ L +EV+ PN+
Sbjct: 575 PLNAIVEIVLVDEVQQPNL 593
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 21.8 bits (44), Expect = 6.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 500 YLYRNGGAGPVELIQLS 450
Y Y NG AGP+ + S
Sbjct: 94 YSYANGAAGPIPVSMAS 110
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 21.4 bits (43), Expect = 8.7
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 460 ISSTGPAPPLR*RYYCRLDAVIVYHLKWPELLVCL 564
IS GP P ++C I+ L P+ CL
Sbjct: 968 ISQDGPLAPSSLFFFCMAAEFIIAALLHPQEFNCL 1002
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 21.4 bits (43), Expect = 8.7
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 460 ISSTGPAPPLR*RYYCRLDAVIVYHLKWPELLVCL 564
IS GP P ++C I+ L P+ CL
Sbjct: 968 ISQDGPLAPSSLFFFCMAAEFIIAALLHPQEFNCL 1002
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,533
Number of Sequences: 336
Number of extensions: 3791
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -