Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0311
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891...    29   4.3  
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413...    29   5.7  

>03_04_0214 +
           18688480-18688832,18688956-18688999,18689039-18689101,
           18689883-18689956,18691526-18692017
          Length = 341

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 562 DRPTIPAI*DGILSPHPTGSNIFIVTEVPV 473
           DRP +P I    +S +PT   + I++EVP+
Sbjct: 200 DRPLVPTIKTFQISTNPTTEGLGIISEVPI 229


>05_01_0495 -
           4136871-4136906,4137043-4137171,4137545-4137694,
           4137782-4137847,4138124-4138168,4139022-4139102,
           4139202-4139283,4139571-4139642,4140473-4140573,
           4140690-4140806,4140929-4141249
          Length = 399

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -1

Query: 590 TTFTGXDKNRQTNNSGHLRWYTITASNRQ*YLYRNGGAGPV--ELIQLSPSLICISNFCI 417
           TT +G   NRQ NNS  + W   +    +  L  +    P+    + +S S + + NF  
Sbjct: 130 TTRSGFFYNRQVNNSVQVDWGEASMIEAERVLLAHALKDPLNERFVFVSDSCVPLYNFNY 189

Query: 416 VSDYDNTKMTTF 381
             DY  +  T+F
Sbjct: 190 TYDYIMSSSTSF 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,226,807
Number of Sequences: 37544
Number of extensions: 401563
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)