Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0311
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   3.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.4  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 420 AEVRYANERRRELNKLDRTGTSVTIKI 500
           AE RY  ERRR+    D   T   IKI
Sbjct: 40  AENRYLTERRRQQLSRDLGLTEAQIKI 66


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 628 YHLVTVQDLTSQVQHSRAVIRTDRPTIPA 542
           +H+ T  +   ++ HS ++ R+ R TI A
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSIRLTITA 136


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 628 YHLVTVQDLTSQVQHSRAVIRTDRPTIPA 542
           +H+ T  +   ++ HS ++ R+ R TI A
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSIRLTITA 136


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 628 YHLVTVQDLTSQVQHSRAVIRTDRPTIPA 542
           +H+ T  +   ++ HS ++ R+ R TI A
Sbjct: 47  FHIATTSNEFIRIHHSGSITRSIRLTITA 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,978
Number of Sequences: 438
Number of extensions: 4685
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)