Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0311
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2...    29   2.7  
At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2...    28   8.3  

>At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2.5)
           plant glutamate receptor family, PMID:11379626
          Length = 829

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 673 SDSATHPIGSFIKTPYHLVTVQDLTSQVQHSRAVIRTDR 557
           S SAT P+   +++PY +    D +SQVQ   A+I + R
Sbjct: 56  SFSATSPLLDSLRSPYFIRATHDDSSQVQAISAIIESFR 94


>At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2.3)
           plant glutamate receptor family, PMID:11379626
          Length = 895

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 673 SDSATHPIGSFIKTPYHLVTVQDLTSQVQHSRAVIR 566
           S SAT PI + +++PY L    + + QVQ  +A+I+
Sbjct: 124 SYSATSPILTSLRSPYFLRATYEDSFQVQPIKAIIK 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,204,830
Number of Sequences: 28952
Number of extensions: 322346
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)