Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0310
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 216 1e-56
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 51 9e-07
SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3) 34 0.11
SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037) 33 0.25
SB_36790| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24) 30 1.7
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19) 29 3.0
SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05) 29 3.0
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4) 28 9.3
>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
Length = 869
Score = 216 bits (528), Expect = 1e-56
Identities = 104/191 (54%), Positives = 133/191 (69%)
Frame = +1
Query: 115 KNILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFY 294
K +LVTGGAGYIGSHCVV +L AG+EV+ IDN +NS + ++R E+I+GKK+ F+
Sbjct: 39 KKVLVTGGAGYIGSHCVVEILNAGYEVVIIDNLSNS-----DAECVRRVEEISGKKVPFF 93
Query: 295 KADLLDKPQINAIFDKHPVDCVIHFAALKAXGESMQQPXXXXXXXXXXXXXXXEIMRSHN 474
DLL+K ++ IF KH + V+HFA LKA GES+Q P E M+ H
Sbjct: 94 IEDLLNKEALDDIFKKHKFNGVLHFAGLKAVGESVQIPLRYYHNNLTGTLHLLECMKKHG 153
Query: 475 CYQMVFSSSCTVYGEPEHLPITETHXTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISL 654
+ +VFSSS TVYG+P+ LPITE+H G TN YG+TKYFIEEMLKDL A+ ++NI+SL
Sbjct: 154 VHNLVFSSSATVYGDPQFLPITESHPAGGCTNPYGKTKYFIEEMLKDLCYAEKEFNIVSL 213
Query: 655 RYFNPVGAHTS 687
RYFNPVGAH S
Sbjct: 214 RYFNPVGAHKS 224
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 51.2 bits (117), Expect = 9e-07
Identities = 44/167 (26%), Positives = 74/167 (44%)
Frame = +1
Query: 109 RFKNILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKIT 288
++ ++LVTGGAGY+GS V LL+ G++V D F + + R + I G
Sbjct: 139 KYPHVLVTGGAGYLGSSLVPILLDQGYKVTVYDRFLWGISSLYPCASNPRLQIING---- 194
Query: 289 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAXGESMQQPXXXXXXXXXXXXXXXEIMRS 468
D+LD ++ + D VIH A++ + P + +
Sbjct: 195 ----DILDVGHLSQCISE--CDAVIHLASIVGYPACEKDPQKATEVNEQGTRNVVDALLP 248
Query: 469 HNCYQMVFSSSCTVYGEPEHLPITETHXTGSITNVYGRTKYFIEEML 609
+V++S+ + YG E TE+ +T +YG+TK EEM+
Sbjct: 249 GQ--PLVYASTGSCYGAIEDGLCTESTPISPLT-LYGKTKANGEEMV 292
>SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)
Length = 114
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 115 KNILVTGGAGYIGSHCVVTLLEAGHEVIAID 207
K ++VTGGAGY GS L E G EV D
Sbjct: 12 KKVVVTGGAGYFGSRLGYALSEKGAEVTLFD 42
>SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)
Length = 116
Score = 33.1 bits (72), Expect = 0.25
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 121 ILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDG--SPALQRAEKITGKKITFY 294
ILVTGG G +GSH + L + AI S+ S +++ KI +
Sbjct: 2 ILVTGGTGLVGSHLLYELALKNLPIKAIYRTKESLATVKRVFSYFTTNVDELF-NKIQWI 60
Query: 295 KADLLDKPQINAIFDKHPVDCVIHFAAL 378
+AD+ D P ++ F + V V H AAL
Sbjct: 61 QADITDVPSLDEAFKE--VTLVYHAAAL 86
>SB_36790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 121 ILVTGGAGYIGSHCVVTLLEAGH 189
I+VTGGAG+IGS+ V L + G+
Sbjct: 5 IIVTGGAGFIGSNIVKALNDKGY 27
>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
Length = 1193
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 262 EKITGKKITFYKADLLDKPQINAIFDKHPV 351
E+I G ++ FY ADL+ + +NA+ + PV
Sbjct: 547 ERIKGIRVIFYMADLIPECIVNAVLYRRPV 576
>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
Length = 672
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 121 ILVTGGAGYIGSHCVVTLLEAGHEVI 198
+LVTG +G+I H V LLE G ++
Sbjct: 18 VLVTGASGFIACHVVKQLLEEGKFIV 43
>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
Length = 226
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 115 KNILVTGGAGYIGSHCVVTLLEAGHEVIAI 204
K ++V GG G G H V L+ GH V I
Sbjct: 8 KKVVVFGGTGKTGLHVVQQALDRGHHVTVI 37
>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1918
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 97 EIMPRFKNILVTGGAGYIGSHCVVTLL----EAGHEVIAIDNFTNSVEDED 237
E++ K + VTG +G S C+ TL E GH+V T +VE E+
Sbjct: 728 ELVSTHKVVCVTGPSGCGKSECIKTLAAAHREMGHQVKTDTVCTGAVESEE 778
>SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 438 DAQLIGDNAITQLLPNGVLVVMYSLRRT*TLADHGDSXHWKYHKCLRQNEVLHR 599
D ++I +A T +L + L+ ++ T DH D H KY K L + LH+
Sbjct: 705 DLRVIVKHAGTVVLQSQWLINLFKKLITVRTFDHMDPTHAKYWKTLEKTGTLHQ 758
>SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4)
Length = 536
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 220 SVEDEDGSPALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVD 354
S DE+ + QRAE IT ++ + P + A F P D
Sbjct: 402 SARDEENNGIFQRAESITSPRLEVIDGNYKKGPVLTACFSLAPRD 446
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,998,421
Number of Sequences: 59808
Number of extensions: 403368
Number of successful extensions: 1503
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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