Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0310
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical p... 183 1e-46
Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical p... 179 2e-45
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 52 6e-07
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 52 6e-07
U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical pr... 41 8e-04
U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical pr... 41 0.001
U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical pr... 29 2.7
U00056-2|AAN65309.2| 187|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z75547-15|CAA99897.2| 251|Caenorhabditis elegans Hypothetical p... 28 6.2
Z75527-10|CAJ80819.1| 251|Caenorhabditis elegans Hypothetical p... 28 6.2
Z71258-12|CAJ30220.1| 555|Caenorhabditis elegans Hypothetical p... 28 6.2
Z71258-10|CAJ30218.1| 439|Caenorhabditis elegans Hypothetical p... 28 6.2
Z71258-9|CAI46548.1| 437|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z71258-8|CAD30427.1| 553|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z71258-7|CAA95782.2| 588|Caenorhabditis elegans Hypothetical pr... 28 6.2
U51136-1|AAA96057.1| 553|Caenorhabditis elegans CHR3 protein. 28 6.2
U13075-1|AAA96983.1| 553|Caenorhabditis elegans steroid hormone... 28 6.2
AL032655-6|CAA21722.1| 462|Caenorhabditis elegans Hypothetical ... 28 6.2
AF332203-1|AAK17974.1| 588|Caenorhabditis elegans nuclear recep... 28 6.2
AF332202-1|AAK17973.1| 573|Caenorhabditis elegans nuclear recep... 28 6.2
Z82078-5|CAB04943.1| 148|Caenorhabditis elegans Hypothetical pr... 28 8.1
>Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical
protein C47B2.6a protein.
Length = 347
Score = 183 bits (446), Expect = 1e-46
Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 2/192 (1%)
Frame = +1
Query: 118 NILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSP-ALQRAEKITGKKITFY 294
+ILVTG AG+IGSH V+ LL +G+ V+ IDNF N++ DE G+ +L+R ++TGK + F
Sbjct: 2 HILVTGAAGFIGSHTVLELLNSGYTVLCIDNFANAISDEHGNAISLKRVAQLTGKDVPFQ 61
Query: 295 KADLLDKPQINAIFDKHPVDCVIHFAALKAXGESMQQPXXXXXXXXXXXXXXXEIMRSHN 474
D+ D+ + +F ++ D +IH AALKA GES+ +P ++ +N
Sbjct: 62 NVDVCDEAALEKVFSENKFDGIIHLAALKAVGESVAKPLQYYSNNLVASLNLIQMCLKYN 121
Query: 475 CYQMVFSSSCTVYGEPEHLPITETHXTG-SITNVYGRTKYFIEEMLKDLSAADDKWNIIS 651
VFSSS TVYG P LPITE TG ITN YG+TKY +E++L D+ A+ +WN++
Sbjct: 122 VKNFVFSSSATVYGPPSELPITEKSQTGQGITNPYGQTKYMMEQILIDVGKANPEWNVVL 181
Query: 652 LRYFNPVGAHTS 687
LRYFNPVGAH S
Sbjct: 182 LRYFNPVGAHKS 193
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 689 GLIGEDPTKXXTNLMPFLAQ 748
GLIGEDP NLMP+++Q
Sbjct: 194 GLIGEDPKGVPNNLMPYVSQ 213
>Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical
protein C47B2.6b protein.
Length = 349
Score = 179 bits (436), Expect = 2e-45
Identities = 90/194 (46%), Positives = 123/194 (63%), Gaps = 4/194 (2%)
Frame = +1
Query: 118 NILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTN--SVEDEDGSP-ALQRAEKITGKKIT 288
+ILVTG AG+IGSH V+ LL +G+ V+ IDNF N SV DE G+ +L+R ++TGK +
Sbjct: 2 HILVTGAAGFIGSHTVLELLNSGYTVLCIDNFANAISVTDEHGNAISLKRVAQLTGKDVP 61
Query: 289 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAXGESMQQPXXXXXXXXXXXXXXXEIMRS 468
F D+ D+ + +F ++ D +IH AALKA GES+ +P ++
Sbjct: 62 FQNVDVCDEAALEKVFSENKFDGIIHLAALKAVGESVAKPLQYYSNNLVASLNLIQMCLK 121
Query: 469 HNCYQMVFSSSCTVYGEPEHLPITETHXTG-SITNVYGRTKYFIEEMLKDLSAADDKWNI 645
+N VFSSS TVYG P LPITE TG ITN YG+TKY +E++L D+ A+ +WN+
Sbjct: 122 YNVKNFVFSSSATVYGPPSELPITEKSQTGQGITNPYGQTKYMMEQILIDVGKANPEWNV 181
Query: 646 ISLRYFNPVGAHTS 687
+ LRYFNPVGAH S
Sbjct: 182 VLLRYFNPVGAHKS 195
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 689 GLIGEDPTKXXTNLMPFLAQ 748
GLIGEDP NLMP+++Q
Sbjct: 196 GLIGEDPKGVPNNLMPYVSQ 215
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 51.6 bits (118), Expect = 6e-07
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 4/200 (2%)
Frame = +1
Query: 115 KNILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFY 294
K IL+TGGAG++GSH V L+ GHEVIA+DN+ +K I
Sbjct: 137 KRILITGGAGFVGSHLVDKLMLDGHEVIALDNYFTG------------RKKNVEHWIGHP 184
Query: 295 KADLLDKPQINAIFDKHPVDCVIHFAALKAXGESMQQPXXXXXXXXXXXXXXXEIMRSHN 474
+++ +N F + VD + H A+ + M P + +
Sbjct: 185 NFEMVHHDVVNPYFVE--VDQIYHLASPASPPHYMYNPVKTIKTNTLGTINMLGLAKRVK 242
Query: 475 CYQMVFSSSCTVYGEPEHLPITETHXTGSITNVYGRTKYFI-EEMLKDLSAADDKWNIIS 651
++ +S+ VYG+PE P ET+ G + + R Y + + + L A +K I
Sbjct: 243 A-TVLLASTSEVYGDPEVHPQPETYW-GHVNTIGPRACYDEGKRVAESLMVAYNKQENIK 300
Query: 652 L---RYFNPVGAHTSRADRR 702
+ R FN G D R
Sbjct: 301 IRIARIFNTFGPRMHMNDGR 320
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 51.6 bits (118), Expect = 6e-07
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 4/200 (2%)
Frame = +1
Query: 115 KNILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFY 294
K IL+TGGAG++GSH V L+ GHEVIA+DN+ +K I
Sbjct: 137 KRILITGGAGFVGSHLVDKLMLDGHEVIALDNYFTG------------RKKNVEHWIGHP 184
Query: 295 KADLLDKPQINAIFDKHPVDCVIHFAALKAXGESMQQPXXXXXXXXXXXXXXXEIMRSHN 474
+++ +N F + VD + H A+ + M P + +
Sbjct: 185 NFEMVHHDVVNPYFVE--VDQIYHLASPASPPHYMYNPVKTIKTNTLGTINMLGLAKRVK 242
Query: 475 CYQMVFSSSCTVYGEPEHLPITETHXTGSITNVYGRTKYFI-EEMLKDLSAADDKWNIIS 651
++ +S+ VYG+PE P ET+ G + + R Y + + + L A +K I
Sbjct: 243 A-TVLLASTSEVYGDPEVHPQPETYW-GHVNTIGPRACYDEGKRVAESLMVAYNKQENIK 300
Query: 652 L---RYFNPVGAHTSRADRR 702
+ R FN G D R
Sbjct: 301 IRIARIFNTFGPRMHMNDGR 320
>U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical
protein C01F1.3a protein.
Length = 631
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +1
Query: 115 KNILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKI-TGKKITF 291
KN+++TGG G+IGS+ V + H+ NF N + S AE + +
Sbjct: 6 KNVVITGGCGFIGSNFVNYI----HDAWPTCNFVNIDKLILNSDTQNVAESVRNSPRYKL 61
Query: 292 YKADLLDKPQINAIFDKHPVDCVIHFAA 375
D+ ++ I +F+++ +D VIHFAA
Sbjct: 62 VLTDIKNEAAILNVFEQNEIDTVIHFAA 89
>U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical
protein F13D11.4 protein.
Length = 343
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 121 ILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKK-ITFYK 297
+LVTG +G+IG+HCV LL+ G+ V +V D + +Q +K+ K + +
Sbjct: 8 VLVTGASGFIGTHCVEILLKNGYRV------RGTVRDLNNKAKVQPIKKLDKKNHLELVE 61
Query: 298 ADLLD 312
ADLLD
Sbjct: 62 ADLLD 66
>U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical
protein F53B1.4 protein.
Length = 342
Score = 40.7 bits (91), Expect = 0.001
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Frame = +1
Query: 121 ILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKIT-GKKITFYK 297
+L+TGG G+IGS+ + F N + G+ L ++I + F +
Sbjct: 11 VLITGGCGFIGSNYINFTFNKWKNT----KFINYDKLAFGASPLHVEKEIRESPRYKFVE 66
Query: 298 ADLLDKPQINAIFDKHPVDCVIHFAALKAXGESMQQPXXXXXXXXXXXXXXXE-IMRS-- 468
A L D+P + ++ VD VIHFAA+ ES E I+ S
Sbjct: 67 AALEDQPTLIKTLQENEVDMVIHFAAITHVDESYSDRIGTIQDNIISTTTLLESIVNSPY 126
Query: 469 HNCYQMVFSSSCTVYGE--PEHLPITETHXTGSITNVYGRTKYFIEEMLK 612
++V S+ VYG+ + P +E+ + TN Y +K E +++
Sbjct: 127 KGVKKLVHISTDEVYGDSFEDTTPKSESASLPNPTNPYAASKAACEMVIR 176
>U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical
protein ZC8.1 protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +1
Query: 124 LVTGGAGYIGSHCVVTLLEAG--HEVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFYK 297
++ GG G++G+H + L + G +I + D P + KI I++ K
Sbjct: 5 VIVGGGGFLGAHVISALQKIGCKERIIVV----------DPCPQEFKTIKIDKSNISYIK 54
Query: 298 ADLLDKPQINAIFDKHPVDCVIHFAALKAXG 390
A LD + I + V+H AA+ G
Sbjct: 55 ASFLDDKVLENIL--NGASAVVHLAAVGHTG 83
>U00056-2|AAN65309.2| 187|Caenorhabditis elegans Hypothetical
protein R05H11.2 protein.
Length = 187
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 472 NCYQMVFSSSCTVYGEPEHLPITETHXTGSITNVYGRTKYFIEEMLKD 615
N +S +V G P +T + + N+Y R K +I E+ KD
Sbjct: 62 NSTTSTYSDCSSVSGSPSSSTMTSSPPPQNFFNIYDRLKEYISEVPKD 109
>Z75547-15|CAA99897.2| 251|Caenorhabditis elegans Hypothetical
protein R11D1.11 protein.
Length = 251
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 115 KNILVTGGAGYIGSHCVVTLLEAGHEVIA 201
K ILVTG + IG ++L +AG +VIA
Sbjct: 10 KRILVTGASQGIGKEICLSLAKAGAQVIA 38
>Z75527-10|CAJ80819.1| 251|Caenorhabditis elegans Hypothetical
protein R11D1.11 protein.
Length = 251
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 115 KNILVTGGAGYIGSHCVVTLLEAGHEVIA 201
K ILVTG + IG ++L +AG +VIA
Sbjct: 10 KRILVTGASQGIGKEICLSLAKAGAQVIA 38
>Z71258-12|CAJ30220.1| 555|Caenorhabditis elegans Hypothetical
protein C01H6.5f protein.
Length = 555
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 KXLGNRCSNPYYTTXTTCLGCSTYWR*CDHTIATKWCSRRH--VQSTANLNTCRSRRL 547
K G++ S +Y T C GC ++R +I C R+ V N N C+ RL
Sbjct: 129 KVCGDKSSGVHYGVIT-CEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRL 185
>Z71258-10|CAJ30218.1| 439|Caenorhabditis elegans Hypothetical
protein C01H6.5d protein.
Length = 439
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 KXLGNRCSNPYYTTXTTCLGCSTYWR*CDHTIATKWCSRRH--VQSTANLNTCRSRRL 547
K G++ S +Y T C GC ++R +I C R+ V N N C+ RL
Sbjct: 13 KVCGDKSSGVHYGVIT-CEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRL 69
>Z71258-9|CAI46548.1| 437|Caenorhabditis elegans Hypothetical
protein C01H6.5c protein.
Length = 437
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 KXLGNRCSNPYYTTXTTCLGCSTYWR*CDHTIATKWCSRRH--VQSTANLNTCRSRRL 547
K G++ S +Y T C GC ++R +I C R+ V N N C+ RL
Sbjct: 13 KVCGDKSSGVHYGVIT-CEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRL 69
>Z71258-8|CAD30427.1| 553|Caenorhabditis elegans Hypothetical
protein C01H6.5b protein.
Length = 553
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 KXLGNRCSNPYYTTXTTCLGCSTYWR*CDHTIATKWCSRRH--VQSTANLNTCRSRRL 547
K G++ S +Y T C GC ++R +I C R+ V N N C+ RL
Sbjct: 129 KVCGDKSSGVHYGVIT-CEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRL 185
>Z71258-7|CAA95782.2| 588|Caenorhabditis elegans Hypothetical
protein C01H6.5a protein.
Length = 588
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 KXLGNRCSNPYYTTXTTCLGCSTYWR*CDHTIATKWCSRRH--VQSTANLNTCRSRRL 547
K G++ S +Y T C GC ++R +I C R+ V N N C+ RL
Sbjct: 164 KVCGDKSSGVHYGVIT-CEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRL 220
>U51136-1|AAA96057.1| 553|Caenorhabditis elegans CHR3 protein.
Length = 553
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 KXLGNRCSNPYYTTXTTCLGCSTYWR*CDHTIATKWCSRRH--VQSTANLNTCRSRRL 547
K G++ S +Y T C GC ++R +I C R+ V N N C+ RL
Sbjct: 129 KVCGDKSSGVHYGVIT-CEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRL 185
>U13075-1|AAA96983.1| 553|Caenorhabditis elegans steroid hormone
receptor familymember CHR3 protein.
Length = 553
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 KXLGNRCSNPYYTTXTTCLGCSTYWR*CDHTIATKWCSRRH--VQSTANLNTCRSRRL 547
K G++ S +Y T C GC ++R +I C R+ V N N C+ RL
Sbjct: 129 KVCGDKSSGVHYGVIT-CEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRL 185
>AL032655-6|CAA21722.1| 462|Caenorhabditis elegans Hypothetical
protein Y6B3B.11 protein.
Length = 462
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 106 PRFKNILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKI 285
PR +L+TGGAG++ + V L E + I +E E + + +K K++
Sbjct: 42 PRPWKVLITGGAGHLAENLVAKLEEMTRDSIR-PKIREMLEKEMPAVISTKVDKEVEKRL 100
Query: 286 TFY 294
Y
Sbjct: 101 PMY 103
>AF332203-1|AAK17974.1| 588|Caenorhabditis elegans nuclear receptor
NHR-23 protein.
Length = 588
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 KXLGNRCSNPYYTTXTTCLGCSTYWR*CDHTIATKWCSRRH--VQSTANLNTCRSRRL 547
K G++ S +Y T C GC ++R +I C R+ V N N C+ RL
Sbjct: 164 KVCGDKSSGVHYGVIT-CEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRL 220
>AF332202-1|AAK17973.1| 573|Caenorhabditis elegans nuclear receptor
NHR-23 protein.
Length = 573
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 380 KXLGNRCSNPYYTTXTTCLGCSTYWR*CDHTIATKWCSRRH--VQSTANLNTCRSRRL 547
K G++ S +Y T C GC ++R +I C R+ V N N C+ RL
Sbjct: 149 KVCGDKSSGVHYGVIT-CEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRL 205
>Z82078-5|CAB04943.1| 148|Caenorhabditis elegans Hypothetical
protein W09D6.4 protein.
Length = 148
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 217 NSVEDEDGSPALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAAL 378
+ + D + P + +AE I+ + K L DK I+A KH + HFA +
Sbjct: 37 DQINDYNNDPHIIKAE-ISAPDVVVNKYTLQDK-DISAALKKHVAEAAAHFATM 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,562
Number of Sequences: 27780
Number of extensions: 304296
Number of successful extensions: 783
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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